8WCF | pdb_00008wcf

Crystal structure of EcThsB


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
  • R-Value Free: 
    0.166 (Depositor), 0.169 (DCC) 
  • R-Value Work: 
    0.136 (Depositor), 0.138 (DCC) 
  • R-Value Observed: 
    0.137 (Depositor) 

Starting Model: in silico
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 8WCF

Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history

Literature

Self-association activates ThsB NAD + hydrolase for defense against phage infection.

Luo, Q.Liu, Q.Liu, T.Wang, X.Wu, X.Chen, Q.Yu, Y.

(2025) Biochem Biophys Res Commun 776: 152217-152217

  • DOI: https://doi.org/10.1016/j.bbrc.2025.152217
  • Primary Citation Related Structures: 
    8WC0, 8WCF

  • PubMed Abstract: 

    Toll/interleukin-1 receptor (TIR) domain serves as a canonical component in both animal and plant innate immunity pathways and is indicated, in some cases, to mediate nicotinamide adenine dinucleotide (NAD + ) cleavage via self-association. Recent studies have revealed the involvement of TIR domains in a bacterial anti-phage defense system called Thoeris. The Thoeris system consists of two core proteins, ThsA and ThsB. Phage infection triggers the TIR-containing ThsB to produce an isomer of cyclic ADP-ribose, which is then transferred to and activates ThsA, leading to NAD + depletion and subsequent cell death. However, the mechanism of ThsB activation remains elusive. Here, we present high-resolution crystal structures of E. coli ThsA and ThsB. Notably, an intact NAD + molecule is observed in the active site of ThsB, implying that monomeric ThsB does not possess NADase activity. We demonstrate that ThsB forms 7-fold oligomers through negative staining electron microscopy, suggesting that self-association activates ThsB NAD + hydrolase. Our findings indicate a new TIR self-association assembly in bacterial anti-phage systems.


  • Organizational Affiliation
    • Department of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu, 610041, China.

Macromolecule Content 

  • Total Structure Weight: 19.21 kDa 
  • Atom Count: 1,685 
  • Modeled Residue Count: 160 
  • Deposited Residue Count: 160 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Molecular chaperone Tir160Escherichia coliMutation(s): 0 
Gene Names: BANRA_02939

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
  • R-Value Free:  0.166 (Depositor), 0.169 (DCC) 
  • R-Value Work:  0.136 (Depositor), 0.138 (DCC) 
  • R-Value Observed: 0.137 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 51.963α = 90
b = 55.712β = 90
c = 58.524γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2024-09-18
    Type: Initial release
  • Version 1.1: 2025-07-02
    Changes: Database references, Structure summary