8W7N

Crystal structure of the in-cell Cry1Aa purified from Bacillus thuringiensis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.60 Å
  • R-Value Free: 0.318 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.222 

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Literature

Crystal structure of the in-cell Cry1Aa purified from Bacillus thuringiensis.

Tanaka, J.Abe, S.Hayakawa, T.Kojima, M.Yamashita, K.Hirata, K.Ueno, T.

(2023) Biochem Biophys Res Commun 685: 149144-149144

  • DOI: https://doi.org/10.1016/j.bbrc.2023.149144
  • Primary Citation of Related Structures:  
    8W7N

  • PubMed Abstract: 

    In-cell protein crystals which spontaneously crystallize in living cells, have recently been analyzed in investigations of their structures and biological functions. The crystals have been challenging to analyze structurally because of their small size. Therefore, the number of in-cell protein crystals in which the native structure has been determined is limited because most of the structures of in-cell crystals have been determined by recrystallization after dissolution. Some proteins have been reported to form intermolecular disulfide bonds in natural protein crystals that stabilize the crystals. Here, we focus on Cry1Aa, a cysteine-rich protein that crystallizes in Bacillus thuringiensis (Bt) and forms disulfide bonds. Previously, the full-length structure of 135 kDa Cry1Ac, which is the same size as Cry1Aa, was determined by recrystallization of dissolved protein from crystals purified from Bt cells. However, the formation of disulfide bonds has not been investigated because it was necessary to replace cysteine residues to prevent aggregation of the soluble protein. In this work, we succeeded in direct X-ray crystallographic analysis using crystals purified from Bt cells and characterized the cross-linked network of disulfide bonds within Cry1Aa crystals.


  • Organizational Affiliation

    School of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, 226-8501, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Pesticidal crystal protein Cry1Aa1,144Bacillus thuringiensisMutation(s): 0 
UniProt
Find proteins for P0A367 (Bacillus thuringiensis subsp. aizawai)
Explore P0A367 
Go to UniProtKB:  P0A367
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A367
Sequence Annotations
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.60 Å
  • R-Value Free: 0.318 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.222 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 88.7α = 90
b = 88.7β = 90
c = 270.19γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata scaling
Cootmodel building
XDSdata reduction
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)Japan--

Revision History  (Full details and data files)

  • Version 1.0: 2024-03-06
    Type: Initial release