8VW6 | pdb_00008vw6

Crystal structure of SsuD

PDB DOI: https://doi.org/10.2210/pdb8VW6/pdb

Classification: FLAVOPROTEIN
Organism(s): Rhodococcus jostii RHA1
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-01-31 Released: 2025-02-05
Deposition Author(s): Caputo, A.T., Hu, M., Scott, C.
Funding Organization(s): Commonwealth Scientific and Industrial Research Organisation (CSIRO)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.61 Å
R-Value Free:
0.278 (Depositor), 0.269 (DCC)
R-Value Work:
0.266 (Depositor), 0.251 (DCC)
R-Value Observed:
0.266 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystral structure of SsuD, a desulfonase protein from Rhodococcus jostii RHA

Hu, M., Caputo, A.T., Scott, C.

(null) Tbd

Macromolecule Content

Total Structure Weight: 83.58 kDa
Atom Count: 5,494
Modeled Residue Count: 692
Deposited Residue Count: 752
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alkanesulfonate monooxygenase	A, B	376	Rhodococcus jostii RHA1	Mutation(s): 0 Gene Names: RHA1_ro01768 EC: 1.14.14.5
UniProt
Find proteins for Q0SFV5 (Rhodococcus jostii (strain RHA1)) Explore Q0SFV5 Go to UniProtKB: Q0SFV5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q0SFV5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.61 Å
R-Value Free: 0.278 (Depositor), 0.269 (DCC)
R-Value Work: 0.266 (Depositor), 0.251 (DCC)
R-Value Observed: 0.266 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.859	α = 90
b = 81.631	β = 90
c = 299.15	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
autoPROC	data processing
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2025-02-05

Deposition Author(s):

Funding Organization	Location	Grant Number
Commonwealth Scientific and Industrial Research Organisation (CSIRO)	Australia	--

Revision History (Full details and data files)

Version 1.0: 2025-02-05
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.