8VW6 | pdb_00008vw6

Crystal structure of SsuD

PDB DOI: https://doi.org/10.2210/pdb8VW6/pdb

Classification: FLAVOPROTEIN
Organism(s): Rhodococcus jostii RHA1
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-01-31 Released: 2025-02-05
Deposition Author(s): Caputo, A.T., Hu, M., Scott, C.
Funding Organization(s): Commonwealth Scientific and Industrial Research Organisation (CSIRO)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.61 Å
R-Value Free:
0.278 (Depositor), 0.269 (DCC)
R-Value Work:
0.266 (Depositor), 0.251 (DCC)
R-Value Observed:
0.266 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history.

Literature

Crystral structure of SsuD, a desulfonase protein from Rhodococcus jostii RHA

Hu, M., Caputo, A.T., Scott, C.

(null) Tbd

Macromolecule Content

Total Structure Weight: 83.58 kDa
Atom Count: 5,494
Modeled Residue Count: 692
Deposited Residue Count: 752
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alkanesulfonate monooxygenase	A, B	376	Rhodococcus jostii RHA1	Mutation(s): 0 Gene Names: RHA1_ro01768 EC: 1.14.14.5
UniProt
Find proteins for Q0SFV5 (Rhodococcus jostii (strain RHA1)) Explore Q0SFV5 Go to UniProtKB: Q0SFV5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q0SFV5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.61 Å
R-Value Free: 0.278 (Depositor), 0.269 (DCC)
R-Value Work: 0.266 (Depositor), 0.251 (DCC)
R-Value Observed: 0.266 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.859	α = 90
b = 81.631	β = 90
c = 299.15	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
autoPROC	data processing
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2025-02-05

Deposition Author(s):

Funding Organization	Location	Grant Number
Commonwealth Scientific and Industrial Research Organisation (CSIRO)	Australia	--

Revision History (Full details and data files)

Version 1.0: 2025-02-05
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.