A small molecule VHL molecular glue degrader for cysteine dioxygenase 1
Tutter, A., Buckley, D., Golosov, A., Ma, X., Shu, W., Michaud, G.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
von Hippel-Lindau disease tumor suppressor | 162 | Homo sapiens | Mutation(s): 0  Gene Names: VHL | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P40337 (Homo sapiens) Explore P40337  Go to UniProtKB:  P40337 | |||||
PHAROS:  P40337 GTEx:  ENSG00000134086  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P40337 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Elongin-B | 118 | Homo sapiens | Mutation(s): 0  Gene Names: ELOB, TCEB2 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15370 (Homo sapiens) Explore Q15370  Go to UniProtKB:  Q15370 | |||||
PHAROS:  Q15370 GTEx:  ENSG00000103363  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q15370 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Elongin-C | 96 | Homo sapiens | Mutation(s): 0  Gene Names: ELOC, TCEB1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15369 (Homo sapiens) Explore Q15369  Go to UniProtKB:  Q15369 | |||||
PHAROS:  Q15369 GTEx:  ENSG00000154582  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q15369 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 4 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Cysteine dioxygenase type 1 | 201 | Homo sapiens | Mutation(s): 0  Gene Names: CDO1 EC: 1.13.11.20 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q16878 (Homo sapiens) Explore Q16878  Go to UniProtKB:  Q16878 | |||||
PHAROS:  Q16878 GTEx:  ENSG00000129596  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q16878 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
A1ACI (Subject of Investigation/LOI) Query on A1ACI | E [auth A] | N-acetyl-3-methyl-L-valyl-(4R)-4-hydroxy-N-{[(4P)-4-(1H-pyrazol-3-yl)naphthalen-1-yl]methyl}-L-prolinamide C27 H33 N5 O4 SURFMMPUSCEGRF-PUZWTLIVSA-N | |||
CIT Query on CIT | F [auth A] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N | |||
FE2 Query on FE2 | G [auth D] | FE (II) ION Fe CWYNVVGOOAEACU-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 116.657 | α = 90 |
b = 177.873 | β = 90 |
c = 103.824 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Not funded | -- |