8TW2

Acinetobacter phage AP205 T=4 VLP


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.39 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis of Acinetobacter type IV pili targeting by an RNA virus.

Meng, R.Xing, Z.Chang, J.Y.Yu, Z.Thongchol, J.Xiao, W.Wang, Y.Chamakura, K.Zeng, Z.Wang, F.Young, R.Zeng, L.Zhang, J.

(2024) Nat Commun 15: 2746-2746

  • DOI: https://doi.org/10.1038/s41467-024-47119-5
  • Primary Citation of Related Structures:  
    8TOB, 8TOC, 8TV9, 8TVA, 8TW2, 8TWC

  • PubMed Abstract: 

    Acinetobacters pose a significant threat to human health, especially those with weakened immune systems. Type IV pili of acinetobacters play crucial roles in virulence and antibiotic resistance. Single-stranded RNA bacteriophages target the bacterial retractile pili, including type IV. Our study delves into the interaction between Acinetobacter phage AP205 and type IV pili. Using cryo-electron microscopy, we solve structures of the AP205 virion with an asymmetric dimer of maturation proteins, the native Acinetobacter type IV pili bearing a distinct post-translational pilin cleavage, and the pili-bound AP205 showing its maturation proteins adapted to pilin modifications, allowing each phage to bind to one or two pili. Leveraging these results, we develop a 20-kilodalton AP205-derived protein scaffold targeting type IV pili in situ, with potential for research and diagnostics.


  • Organizational Affiliation

    Center for Phage Technology, Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX, 77843, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Coat protein
A [auth AA],
AA [auth BA],
AB [auth CA],
AC [auth DA],
AD [auth EB],
AE [auth FB],
AF [auth GB],
AG [auth HC],
AH [auth ID],
AI [auth JE],
B [auth AB],
BA [auth BB],
BB [auth CB],
BC [auth DB],
BD [auth EC],
BE [auth FC],
BF [auth GC],
BG [auth HD],
BH [auth IE],
BI [auth JF],
C [auth AC],
CA [auth BC],
CB [auth CC],
CC [auth DC],
CD [auth ED],
CE [auth FD],
CF [auth GD],
CG [auth HE],
CH [auth IF],
CI [auth JG],
D [auth AD],
DA [auth BD],
DB [auth CD],
DC [auth DE],
DD [auth EE],
DE [auth FE],
DF [auth GE],
DG [auth HF],
DH [auth IG],
DI [auth JH],
E [auth AE],
EA [auth BE],
EB [auth CE],
EC [auth DF],
ED [auth EF],
EE [auth FF],
EF [auth GF],
EG [auth HG],
EH [auth IH],
EI [auth JI],
F [auth AF],
FA [auth BF],
FB [auth CF],
FC [auth DG],
FD [auth EG],
FE [auth FG],
FF [auth GG],
FG [auth HI],
FH [auth II],
FI [auth JJ],
G [auth AG],
GA [auth BG],
GB [auth CG],
GC [auth DH],
GD [auth EH],
GE [auth FH],
GF [auth GH],
GG [auth HJ],
GH [auth IJ],
H [auth AH],
HA [auth BH],
HB [auth CH],
HC [auth DI],
HD [auth EI],
HE [auth FI],
HF [auth GI],
HG [auth HK],
HH [auth IK],
I [auth AI],
IA [auth BI],
IB [auth CI],
IC [auth DJ],
ID [auth EJ],
IE [auth FJ],
IF [auth GK],
IG [auth HL],
IH [auth IL],
J [auth AJ],
JA [auth BJ],
JB [auth CJ],
JC [auth DK],
JD [auth EK],
JE [auth FK],
JF [auth GL],
JG [auth HM],
JH [auth IM],
K [auth AK],
KA [auth BK],
KB [auth CK],
KC [auth DL],
KD [auth EL],
KE [auth FL],
KF [auth GM],
KG [auth HN],
KH [auth IN],
L [auth AL],
LA [auth BL],
LB [auth CL],
LC [auth DM],
LD [auth EM],
LE [auth FM],
LF [auth GN],
LG [auth HO],
LH [auth IO],
M [auth AM],
MA [auth BM],
MB [auth CM],
MC [auth DN],
MD [auth EN],
ME [auth FN],
MF [auth GO],
MG [auth HP],
MH [auth IP],
N [auth AN],
NA [auth BN],
NB [auth CN],
NC [auth DO],
ND [auth EO],
NE [auth FO],
NF [auth GP],
NG [auth HQ],
NH [auth IQ],
O [auth AO],
OA [auth BO],
OB [auth CO],
OC [auth DP],
OD [auth EP],
OE [auth FP],
OF [auth GQ],
OG [auth HR],
OH [auth IR],
P [auth AP],
PA [auth BP],
PB [auth CP],
PC [auth DQ],
PD [auth EQ],
PE [auth FQ],
PF [auth GR],
PG [auth HS],
PH [auth IS],
Q [auth AQ],
QA [auth BQ],
QB [auth CQ],
QC [auth DR],
QD [auth ER],
QE [auth FR],
QF [auth GS],
QG [auth HT],
QH [auth IT],
R [auth AR],
RA [auth BR],
RB [auth CR],
RC [auth DS],
RD [auth ES],
RE [auth FS],
RF [auth GT],
RG [auth HU],
RH [auth IU],
S [auth AS],
SA [auth BS],
SB [auth CS],
SC [auth DT],
SD [auth ET],
SE [auth FT],
SF [auth GU],
SG [auth HV],
SH [auth IV],
T [auth AT],
TA [auth BT],
TB [auth CT],
TC [auth DU],
TD [auth EU],
TE [auth FU],
TF [auth GV],
TG [auth HW],
TH [auth IW],
U [auth AU],
UA [auth BU],
UB [auth CU],
UC [auth DV],
UD [auth EV],
UE [auth FV],
UF [auth GW],
UG [auth HX],
UH [auth IX],
V [auth AV],
VA [auth BV],
VB [auth CV],
VC [auth DW],
VD [auth EW],
VE [auth FW],
VF [auth GX],
VG [auth HY],
VH [auth IZ],
W [auth AW],
WA [auth BW],
WB [auth CW],
WC [auth DX],
WD [auth EX],
WE [auth FX],
WF [auth GY],
WG [auth HZ],
WH [auth JA],
X [auth AX],
XA [auth BX],
XB [auth CX],
XC [auth DY],
XD [auth EY],
XE [auth FY],
XF [auth GZ],
XG [auth IA],
XH [auth JB],
Y [auth AY],
YA [auth BY],
YB [auth CY],
YC [auth DZ],
YD [auth EZ],
YE [auth FZ],
YF [auth HA],
YG [auth IB],
YH [auth JC],
Z [auth AZ],
ZA [auth BZ],
ZB [auth CZ],
ZC [auth EA],
ZD [auth FA],
ZE [auth GA],
ZF [auth HB],
ZG [auth IC],
ZH [auth JD]
129Acinetobacter phage AP205Mutation(s): 0 
UniProt
Find proteins for Q9AZ42 (Acinetobacter phage AP205)
Explore Q9AZ42 
Go to UniProtKB:  Q9AZ42
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9AZ42
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.39 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United States1R01GM141659

Revision History  (Full details and data files)

  • Version 1.0: 2024-03-06
    Type: Initial release
  • Version 1.1: 2024-04-10
    Changes: Database references