8TAH | pdb_00008tah

Cryo-EM structure of Cortactin-bound to Arp2/3 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.89 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

Mechanism of synergistic activation of Arp2/3 complex by cortactin and WASP-family proteins.

Fregoso, F.E.Boczkowska, M.Rebowski, G.Carman, P.J.van Eeuwen, T.Dominguez, R.

(2023) Nat Commun 14: 6894-6894

  • DOI: https://doi.org/10.1038/s41467-023-42229-y
  • Primary Citation Related Structures: 
    8TAH

  • PubMed Abstract: 

    Cortactin coactivates Arp2/3 complex synergistically with WASP-family nucleation-promoting factors (NPFs) and stabilizes branched networks by linking Arp2/3 complex to F-actin. It is poorly understood how cortactin performs these functions. We describe the 2.89 Å resolution cryo-EM structure of cortactin's N-terminal domain (Cort 1-76 ) bound to Arp2/3 complex. Cortactin binds Arp2/3 complex through an inverted Acidic domain (D20-V29), which targets the same site on Arp3 as the Acidic domain of NPFs but with opposite polarity. Sequences N- and C-terminal to cortactin's Acidic domain do not increase its affinity for Arp2/3 complex but contribute toward coactivation with NPFs. Coactivation further increases with NPF dimerization and for longer cortactin constructs with stronger binding to F-actin. The results suggest that cortactin contributes to Arp2/3 complex coactivation with NPFs in two ways, by helping recruit the complex to F-actin and by stabilizing the short-pitch (active) conformation, which are both byproducts of cortactin's core function in branch stabilization.


  • Organizational Affiliation
    • Department of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

Macromolecule Content 

  • Total Structure Weight: 234.57 kDa 
  • Atom Count: 14,978 
  • Modeled Residue Count: 1,884 
  • Deposited Residue Count: 2,055 
  • Unique protein chains: 8

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Actin-related protein 3418Bos taurusMutation(s): 0 
UniProt
Find proteins for P61157 (Bos taurus)
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UniProt GroupP61157
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Actin-related protein 2394Bos taurusMutation(s): 0 
UniProt
Find proteins for A7MB62 (Bos taurus)
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UniProt GroupA7MB62
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Actin-related protein 2/3 complex subunit 1A370Bos taurusMutation(s): 0 
UniProt
Find proteins for Q1JP79 (Bos taurus)
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UniProt GroupQ1JP79
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Actin-related protein 2/3 complex subunit 2300Bos taurusMutation(s): 0 
UniProt
Find proteins for Q3MHR7 (Bos taurus)
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UniProt GroupQ3MHR7
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Actin-related protein 2/3 complex subunit 3178Bos taurusMutation(s): 0 
UniProt
Find proteins for Q3T035 (Bos taurus)
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UniProt GroupQ3T035
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Reference Sequence
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Actin-related protein 2/3 complex subunit 4168Bos taurusMutation(s): 0 
UniProt
Find proteins for Q148J6 (Bos taurus)
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UniProt GroupQ148J6
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Reference Sequence
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Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
Actin-related protein 2/3 complex subunit 5151Bos taurusMutation(s): 0 
UniProt
Find proteins for G3MXC8 (Bos taurus)
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Reference Sequence
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Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
Src substrate cortactin76Mus musculusMutation(s): 0 
Gene Names: Cttn
UniProt & NIH Common Fund Data Resources
Find proteins for Q60598 (Mus musculus)
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IMPC:  MGI:99695
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UniProt GroupQ60598
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.89 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01 GM073791
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesF31 GM148048

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-27
    Type: Initial release
  • Version 1.1: 2023-11-08
    Changes: Database references
  • Version 1.2: 2024-01-31
    Changes: Data collection, Structure summary