8T0G

Backbone Dialkylation in Peptide Hairpins: Natural Backbone Prototype


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Effects of chirality and side chain length in C alpha , alpha-dialkylated residues on beta-hairpin peptide folded structure and stability.

Heath, S.L.Horne, W.S.Lengyel, G.A.

(2023) Org Biomol Chem 21: 6320-6324

  • DOI: https://doi.org/10.1039/d3ob00963g
  • Primary Citation of Related Structures:  
    8T0G, 8T0H, 8T0I

  • PubMed Abstract: 

    Strategic incorporation of achiral C α,α -dialkylated amino acids with bulky substituents into peptides can be used to promote extended strand conformations and inhibit protein-protein interactions associated with amyloid formation. In this work, we evaluate the thermodynamic impact of chiral C α,α monomers on folding preferences in such systems through introduction of a series of C α -methylated and C α -ethylated residues into a β-hairpin host sequence. Depending on stereochemical configuration of the artificial monomer and potential for additional hydrophobic packing, a C α -ethyl-C α -propyl glycine residue can provide similar or enhanced folded stability relative to an achiral C α,α -diethyl analogue.


  • Organizational Affiliation

    Department of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260, USA.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Immunoglobulin G-binding protein G17Streptococcus sp. 'group GMutation(s): 2 
UniProt
Find proteins for P06654 (Streptococcus sp. group G)
Explore P06654 
Go to UniProtKB:  P06654
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP06654
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States107161
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States149220

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-16
    Type: Initial release