8RFH | pdb_00008rfh

CryoEM structure of the plant helper NLR NRC2 in its resting state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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This is version 1.1 of the entry. See complete history


Literature

Activation of plant immunity through conversion of a helper NLR homodimer into a resistosome.

Selvaraj, M.Toghani, A.Pai, H.Sugihara, Y.Kourelis, J.Yuen, E.L.H.Ibrahim, T.Zhao, H.Xie, R.Maqbool, A.De la Concepcion, J.C.Banfield, M.J.Derevnina, L.Petre, B.Lawson, D.M.Bozkurt, T.O.Wu, C.H.Kamoun, S.Contreras, M.P.

(2024) PLoS Biol 22: e3002868-e3002868

  • DOI: https://doi.org/10.1371/journal.pbio.3002868
  • Primary Citation of Related Structures:  
    8RFH

  • PubMed Abstract: 

    Nucleotide-binding domain and leucine-rich repeat (NLR) proteins can engage in complex interactions to detect pathogens and execute a robust immune response via downstream helper NLRs. However, the biochemical mechanisms of helper NLR activation by upstream sensor NLRs remain poorly understood. Here, we show that the coiled-coil helper NLR NRC2 from Nicotiana benthamiana accumulates in vivo as a homodimer that converts into a higher-order oligomer upon activation by its upstream virus disease resistance protein Rx. The cryo-EM structure of NbNRC2 in its resting state revealed intermolecular interactions that mediate homodimer formation and contribute to immune receptor autoinhibition. These dimerization interfaces have diverged between paralogous NRC proteins to insulate critical network nodes and enable redundant immune pathways, possibly to minimise undesired cross-activation and evade pathogen suppression of immunity. Our results expand the molecular mechanisms of NLR activation pointing to transition from homodimers to higher-order oligomeric resistosomes.


  • Organizational Affiliation
    • The Sainsbury Laboratory, University of East Anglia; Norwich Research Park, Norwich, United Kingdom.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
NRC2a
A, B
940Nicotiana benthamianaMutation(s): 0 
UniProt
Find proteins for A0A0S3ANR1 (Nicotiana benthamiana)
Explore A0A0S3ANR1 
Go to UniProtKB:  A0A0S3ANR1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0S3ANR1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomV002937/1

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-10
    Type: Initial release
  • Version 1.1: 2024-10-30
    Changes: Data collection, Database references, Structure summary