8RCH | pdb_00008rch

Deposited: 2023-12-06 Released: 2024-09-11
Deposition Author(s): Anandapadamanaban, M., Hay, I.M., Perisic, O., Williams, R.L.
Funding Organization(s): Cancer Research UK, Medical Research Council (MRC, United Kingdom), European Molecular Biology Organization (EMBO)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Macromolecule Content

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine/threonine-protein kinase mTOR	A, E [auth B]	2,549	Homo sapiens	Mutation(s): 0 Gene Names: MTOR, FRAP, FRAP1, FRAP2, RAFT1, RAPT1 EC: 2.7.11.1 (PDB Primary Data), 2.7.10.2 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P42345 (Homo sapiens) Explore P42345 Go to UniProtKB: P42345
PHAROS: P42345 GTEx: ENSG00000198793
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P42345
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Target of rapamycin complex subunit LST8	B [auth D], F [auth E]	326	Homo sapiens	Mutation(s): 0 Gene Names: MLST8, GBL, LST8
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BVC4 (Homo sapiens) Explore Q9BVC4 Go to UniProtKB: Q9BVC4
PHAROS: Q9BVC4 GTEx: ENSG00000167965
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9BVC4
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Reference Sequence

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Regulatory-associated protein of mTOR	C [auth W], G [auth Y]	1,335	Homo sapiens	Mutation(s): 0 Gene Names: RPTOR, KIAA1303, RAPTOR
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N122 (Homo sapiens) Explore Q8N122 Go to UniProtKB: Q8N122
PHAROS: Q8N122 GTEx: ENSG00000141564
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8N122
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Reference Sequence

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| 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Eukaryotic translation initiation factor 4E-binding protein 1	D [auth Z], H [auth X]	118	Homo sapiens	Mutation(s): 0 Gene Names: EIF4EBP1
UniProt & NIH Common Fund Data Resources
Find proteins for Q13541 (Homo sapiens) Explore Q13541 Go to UniProtKB: Q13541
PHAROS: Q13541 GTEx: ENSG00000187840
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q13541
Sequence Annotations Expand
Reference Sequence

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ANP (Subject of Investigation/LOI) Query on ANP Download:Ideal Coordinates CCD File SDF format, chain L [auth B] SDF format, chain I [auth A] MOL2 format, chain L [auth B] MOL2 format, chain I [auth A] mmCIF format, chain L [auth B] mmCIF format, chain I [auth A]	I [auth A], L [auth B]	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C₁₀ H₁₇ N₆ O₁₂ P₃ PVKSNHVPLWYQGJ-KQYNXXCUSA-N		Interactions Focus chain I [auth A] Focus chain L [auth B] Interactions & Density Focus chain I [auth A] Focus chain L [auth B]
MG (Subject of Investigation/LOI) Query on MG Download:Ideal Coordinates CCD File SDF format, chain N [auth B] SDF format, chain M [auth B] SDF format, chain K [auth A] SDF format, chain J [auth A] MOL2 format, chain N [auth B] MOL2 format, chain M [auth B] MOL2 format, chain K [auth A] MOL2 format, chain J [auth A] mmCIF format, chain N [auth B] mmCIF format, chain M [auth B] mmCIF format, chain K [auth A] mmCIF format, chain J [auth A]	J [auth A], K [auth A], M [auth B], N [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain J [auth A] Focus chain K [auth A] Focus chain M [auth B] Focus chain N [auth B] Interactions & Density Focus chain J [auth A] Focus chain K [auth A] Focus chain M [auth B] Focus chain N [auth B]

& Funding Information

Deposition Author(s):

Anandapadamanaban, M.

Funding Organization	Location	Grant Number
Cancer Research UK	United Kingdom	DRCPGM 100014
Medical Research Council (MRC, United Kingdom)	United Kingdom	MC_U105184308
European Molecular Biology Organization (EMBO)	European Union	EMBO ALTF 603-2019