8R69 | pdb_00008r69

Neck and tail of phage 812 virion (composite)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
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This is version 1.1 of the entry. See complete history


Literature

Genome anchoring, retention, and release by neck proteins of Staphylococcus phage 812.

Cienikova, Z.Novacek, J.Siborova, M.Popelarova, B.Fuzik, T.Botka, T.Benesik, M.Bardy, P.Pantucek, R.Plevka, P.

(2026) Commun Biol 

  • DOI: https://doi.org/10.1038/s42003-025-09477-8
  • Primary Citation of Related Structures:  
    8Q01, 8Q1I, 8Q7D, 8QEK, 8QEM, 8QGR, 8QJE, 8QKH, 8R5G, 8R69

  • PubMed Abstract: 

    The virion of Staphylococcus phage 812 is formed by a capsid and a contractile tail joined together by neck proteins. The neck proteins are crucial for virion assembly, DNA packaging, and the regulation of genome release, but their functions are not completely understood. Here, we show that the neck of phage 812 consists of portal, adaptor, stopper, tail terminator, and two types of decoration proteins. A dodecameric DNA-binding site at the surface of the portal complex anchors the phage genome inside the capsid. The adaptor complex induces a local B-to-A form transition of the DNA in the neck channel that could slow or pause genome translocation during ejection. The central channel of a stopper complex that is not attached to the tail terminator complex is closed by gating loops. In contrast, in the phage 812 virion, the gating loops are in an open conformation, and the DNA extends into the tail. The structure of neck proteins is not affected by tail sheath contraction. Therefore, the expulsion of tail tape measure proteins triggers the genome release.


  • Organizational Affiliation
    • CEITEC Masaryk University, Kamenice 753/5, 625 00, Brno, Czech Republic.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid proteinA [auth T],
C [auth U]
142Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A1YTP2 (Staphylococcus phage 812)
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Go to UniProtKB:  A1YTP2
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UniProt GroupA1YTP2
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Major tail sheath proteinB [auth V],
D [auth W]
587Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A0A0U1WZ79 (Staphylococcus phage 812)
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UniProt GroupA0A0U1WZ79
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Portal proteinE [auth A],
F [auth B]
563Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A0A0U1WIV9 (Staphylococcus phage 812)
Explore A0A0U1WIV9 
Go to UniProtKB:  A0A0U1WIV9
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UniProt GroupA0A0U1WIV9
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid proteinG [auth E]292Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A1YTN7 (Staphylococcus phage 812)
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UniProt GroupA1YTN7
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Baseplate hub assembly proteinH [auth G]278Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A1YTN9 (Staphylococcus phage 812)
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UniProt GroupA1YTN9
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Putative non-cytoplasmic proteinI [auth N],
J [auth n]
87Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A0A0U1WZ69 (Staphylococcus phage 812)
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UniProt GroupA0A0U1WZ69
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Non-cytoplasmic proteinK [auth S],
L [auth s]
152Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A0A0U1WIM1 (Staphylococcus phage 812)
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Putative neck proteinM [auth C],
N [auth D]
302Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A1YTN6 (Staphylococcus phage 812)
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UniProt GroupA1YTN6
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Education, Youth and Sports of the Czech RepublicCzech Republic--

Revision History  (Full details and data files)

  • Version 1.0: 2024-12-04
    Type: Initial release
  • Version 1.1: 2026-01-21
    Changes: Data collection, Database references