8Q01 | pdb_00008q01

Neck of phage 812 after tail contraction (C6)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.58 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Genome anchoring, retention, and release by neck proteins of Herelleviridae phage 812

Cienikova, Z., Novacek, J., Siborova, M., Popelarova, B., Fuzik, T., Benesik, M., Bardy, P., Plevka, P.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tail tube proteinA,
C [auth G]		142Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A1YTP2 (Staphylococcus phage 812)
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Go to UniProtKB:  A1YTP2
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UniProt GroupA1YTP2
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Tail terminator proteinB [auth M]278Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A1YTN9 (Staphylococcus phage 812)
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Go to UniProtKB:  A1YTN9
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UniProt GroupA1YTN9
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Tail sheath proteinD [auth r]587Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A0A0U1WZ79 (Staphylococcus phage 812)
Explore A0A0U1WZ79 
Go to UniProtKB:  A0A0U1WZ79
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UniProt GroupA0A0U1WZ79
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid proteinE [auth S]292Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A1YTN7 (Staphylococcus phage 812)
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Go to UniProtKB:  A1YTN7
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UniProt GroupA1YTN7
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  • Reference Sequence
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Adaptor proteinF [auth b],
G [auth c]		302Staphylococcus phage 812Mutation(s): 0 
UniProt
Find proteins for A1YTN6 (Staphylococcus phage 812)
Explore A1YTN6 
Go to UniProtKB:  A1YTN6
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UniProt GroupA1YTN6
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN
Download Ideal Coordinates CCD File 
H [auth S]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.58 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.19
MODEL REFINEMENTISOLDE1.4
RECONSTRUCTIONRELION3.1

Structure Validation

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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Ministry of Education, Youth and Sports of the Czech RepublicCzech Republic--

Revision History  (Full details and data files)

  • Version 1.0: 2024-08-07
    Type: Initial release