8PVX | pdb_00008pvx

Structure of the Lifeact13-F-actin complex

PDB DOI: https://doi.org/10.2210/pdb8PVX/pdb
EM Map EMD-17979: EMDB EMDataResource

Classification: STRUCTURAL PROTEIN
Organism(s): Saccharomyces cerevisiae, Oryctolagus cuniculus
Mutation(s): No

Deposited: 2023-07-18 Released: 2024-07-24
Deposition Author(s): Belyy, A., Raunser, S.
Funding Organization(s): Max Planck Society

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.55 Å
Aggregation State: FILAMENT
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

To be published

Belyy, A., Raunser, S.

To be published.

Macromolecule Content

Total Structure Weight: 220.07 kDa
Atom Count: 15,140
Modeled Residue Count: 1,920
Deposited Residue Count: 1,950
Unique protein chains: 2

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lifeact13	A [auth H], C [auth J], E [auth F], G [auth I], I [auth G]	13	Saccharomyces cerevisiae	Mutation(s): 0 EC: 2.1.1.268
UniProt
Find proteins for Q08641 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q08641 Go to UniProtKB: Q08641
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q08641
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Actin, alpha skeletal muscle	B [auth C], D [auth E], F [auth A], H [auth D], J [auth B]	377	Oryctolagus cuniculus	Mutation(s): 0 EC: 3.6.4
UniProt
Find proteins for P68135 (Oryctolagus cuniculus) Explore P68135 Go to UniProtKB: P68135
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P68135
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ADP Query on ADP Download Ideal Coordinates CCD File SDF format, chain S [auth B] SDF format, chain Q [auth D] SDF format, chain O [auth A] SDF format, chain M [auth E] SDF format, chain K [auth C] MOL2 format, chain S [auth B] MOL2 format, chain Q [auth D] MOL2 format, chain O [auth A] MOL2 format, chain M [auth E] MOL2 format, chain K [auth C] mmCIF format, chain S [auth B] mmCIF format, chain Q [auth D] mmCIF format, chain O [auth A] mmCIF format, chain M [auth E] mmCIF format, chain K [auth C]	K [auth C], M [auth E], O [auth A], Q [auth D], S [auth B]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Interactions Focus chain K [auth C] Focus chain M [auth E] Focus chain O [auth A] Focus chain Q [auth D] Focus chain S [auth B] Interactions & Density Focus chain K [auth C] Focus chain M [auth E] Focus chain O [auth A] Focus chain Q [auth D] Focus chain S [auth B]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain T [auth B] SDF format, chain R [auth D] SDF format, chain P [auth A] SDF format, chain N [auth E] SDF format, chain L [auth C] MOL2 format, chain T [auth B] MOL2 format, chain R [auth D] MOL2 format, chain P [auth A] MOL2 format, chain N [auth E] MOL2 format, chain L [auth C] mmCIF format, chain T [auth B] mmCIF format, chain R [auth D] mmCIF format, chain P [auth A] mmCIF format, chain N [auth E] mmCIF format, chain L [auth C]	L [auth C], N [auth E], P [auth A], R [auth D], T [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain L [auth C] Focus chain N [auth E] Focus chain P [auth A] Focus chain R [auth D] Focus chain T [auth B] Interactions & Density Focus chain L [auth C] Focus chain N [auth E] Focus chain P [auth A] Focus chain R [auth D] Focus chain T [auth B]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
HIC Query on HIC	B [auth C], D [auth E], F [auth A], H [auth D], J [auth B]	L-PEPTIDE LINKING	C₇ H₁₁ N₃ O₂		HIS