8OVE

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

A single pseudouridine on rRNA regulates ribosome structure and function in the mammalian parasite Trypanosoma brucei.

Rajan, K.S.Madmoni, H.Bashan, A.Taoka, M.Aryal, S.Nobe, Y.Doniger, T.Galili Kostin, B.Blumberg, A.Cohen-Chalamish, S.Schwartz, S.Rivalta, A.Zimmerman, E.Unger, R.Isobe, T.Yonath, A.Michaeli, S.

(2023) Nat Commun 14: 7462-7462

  • DOI: https://doi.org/10.1038/s41467-023-43263-6
  • Primary Citation of Related Structures:  
    8OVA, 8OVE

  • PubMed Abstract: 

    Trypanosomes are protozoan parasites that cycle between insect and mammalian hosts and are the causative agent of sleeping sickness. Here, we describe the changes of pseudouridine (Ψ) modification on rRNA in the two life stages of the parasite using four different genome-wide approaches. CRISPR-Cas9 knock-outs of all four snoRNAs guiding Ψ on helix 69 (H69) of the large rRNA subunit were lethal. A single knock-out of a snoRNA guiding Ψ530 on H69 altered the composition of the 80S monosome. These changes specifically affected the translation of only a subset of proteins. This study correlates a single site Ψ modification with changes in ribosomal protein stoichiometry, supported by a high-resolution cryo-EM structure. We propose that alteration in rRNA modifications could generate ribosomes preferentially translating state-beneficial proteins.


  • Organizational Affiliation

    The Mina and Everard Goodman Faculty of Life Sciences and Advanced and Nanotechnology Institute, Bar-Ilan University, Ramat-Gan, 5290002, Israel.


Macromolecules

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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein L14, putativeH [auth BP]189Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L15I [auth BQ]221Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q38CY7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L17, putativeJ [auth BR]166Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L18aK [auth BS]179Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L19, putativeL [auth BT]260Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L21E, putativeM [auth BU]159Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L23, putativeN [auth BW]139Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L24O [auth BY]125Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for O77067 (Trypanosoma brucei)
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L23aP [auth BX]164Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for P41165 (Trypanosoma brucei brucei)
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L26, putativeQ [auth BZ]143Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q38D25 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L38, putativeR [auth Bp]82Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q38FV6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L39, putativeS [auth Bq]51Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L4T [auth Br]374Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q582N2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L44U [auth Bt]106Trypanosoma brucei bruceiMutation(s): 0 
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Find proteins for P17843 (Trypanosoma brucei brucei)
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L7, putativeV [auth Bw]257Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q57V35 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L7aW [auth Bx]276Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q57VM1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L35A, putativeX [auth Bl]149Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q584G9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L5, putativeY [auth Bu]308Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L9, putativeZ [auth By]189Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q38CD0 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3aAA [auth A0]256Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q38BK6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S5, putativeBA [auth A2]190Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q385D9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S8CA [auth A5]220Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q57YL6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S10, putativeDA [auth AD]172Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q38B66 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
Putative ribosomal protein S29EA [auth A8]57Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal proteins S11, putativeFA [auth AE]174Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S13, putativeGA [auth AG]151Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S15, putativeHA [auth AI]152Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S14IA [auth AH]144Trypanosoma brucei bruceiMutation(s): 0 
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Find proteins for P19800 (Trypanosoma brucei brucei)
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S15a, putativeJA [auth AJ]130Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S17, putativeKA [auth AL]142Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S18, putativeLA [auth AM]153Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein S19, putativeMA [auth AO]167Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S2, putativeNA [auth AP]266Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S23, putativeOA [auth AS]143Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S25PA [auth AU]113Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3, putativeQA [auth AX]214Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S33, putativeRA [auth AZ]103Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S6SA [auth A3]250Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S24TA [auth AT]137Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S4UA [auth A1]273Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein SAVA [auth AC]277Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L28, putativeWA [auth Bc]146Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q385E9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L41XA [auth Bz]34Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L37a, putativeYA [auth Bo]93Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L37ZA [auth Bn]84Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L36, putativeAB [auth Bm]109Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L35, putativeBB [auth Bk]127Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L34, putativeCB [auth Bj]170Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L32, putativeDB [auth Bi]132Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L30EB [auth Bg]105Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L29FB [auth Bd]71Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27aGB [auth Bb]145Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27HB [auth Ba]133Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L13a, putativeIB [auth BO]222Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L13JB [auth BN]218Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L11, putativeKB [auth BL]194Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L10, putativeLB [auth BK]213Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L18MB [auth BI]193Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L2, putativeNB [auth Be]260Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S16, putativeOB [auth AK]149Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
Probable 40S ribosomal protein S9PB [auth A6]190Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L3, mitochondrial, putativeQB [auth Bf]429Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S30RB [auth AY]66Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L6, putativeSB [auth Bv]192Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal subunit protein L31, putativeTB [auth Bh]188Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-60S ribosomal protein L40XB [auth Bs]128Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L22, putativeYB [auth BV]130Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
RNA-binding proteinZB [auth Az]279Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein S10AC [auth AQ]117Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 80
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S21, putativeBC [auth AR]194Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 81
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S26CC [auth AV]111Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 82
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S27, putativeDC [auth AW]86Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 83
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S7EC [auth A4]202Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 84
MoleculeChains Sequence LengthOrganismDetailsImage
Guanine nucleotide-binding protein subunit beta-like proteinFC [auth A7]318Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 85
MoleculeChains Sequence LengthOrganismDetailsImage
HIS-THR-CYS-THRGC [auth A]4Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 1
MoleculeChains LengthOrganismImage
SSU rRNAA [auth AA]2,280Trypanosoma brucei brucei
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Entity ID: 2
MoleculeChains LengthOrganismImage
E-SITE TRNAB [auth AB]19Trypanosoma brucei brucei
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Entity ID: 3
MoleculeChains LengthOrganismImage
LUS_alpha rRNAC [auth BA]1,920Trypanosoma brucei brucei
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Entity ID: 4
MoleculeChains LengthOrganismImage
LSUb rRNAD [auth BB]1,536Trypanosoma brucei brucei
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Entity ID: 5
MoleculeChains LengthOrganismImage
5.8S rRNAE [auth BC]209Trypanosoma brucei brucei
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Entity ID: 6
MoleculeChains LengthOrganismImage
5S rRNAF [auth BD]119Trypanosoma brucei brucei
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Entity ID: 7
MoleculeChains LengthOrganismImage
SrRNA 1G [auth BE]216Trypanosoma brucei brucei
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Entity ID: 73
MoleculeChains LengthOrganismImage
SrRNA 6UB [auth BF]78Trypanosoma brucei brucei
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Entity ID: 74
MoleculeChains LengthOrganismImage
SrRNA 2VB [auth BG]183Trypanosoma brucei brucei
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Entity ID: 75
MoleculeChains LengthOrganismImage
SrRNA 4WB [auth BH]136Trypanosoma brucei brucei
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

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AF [auth AA]
BF [auth AA]
CF [auth AA]
CI [auth BA]
CK [auth BB]
AF [auth AA],
BF [auth AA],
CF [auth AA],
CI [auth BA],
CK [auth BB],
DF [auth AA],
DI [auth BA],
DK [auth BB],
DL [auth AG],
EF [auth AA],
EK [auth BB],
EL [auth AP],
FF [auth AA],
FK [auth BB],
GF [auth AA],
GK [auth BB],
HE [auth AA],
HK [auth BB],
HL [auth Be],
IE [auth AA],
IK [auth BB],
JE [auth AA],
JK [auth BB],
KE [auth AA],
LE [auth AA],
ME [auth AA],
ML [auth BG],
NE [auth AA],
NL [auth AV],
OE [auth AA],
PE [auth AA],
QE [auth AA],
RE [auth AA],
SE [auth AA],
TE [auth AA],
UE [auth AA],
VE [auth AA],
WE [auth AA],
XE [auth AA],
YE [auth AA],
ZE [auth AA]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
MG
Query on MG

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AD [auth AA]
AE [auth AA]
AH [auth BA]
AI [auth BA]
AJ [auth BB]
AD [auth AA],
AE [auth AA],
AH [auth BA],
AI [auth BA],
AJ [auth BB],
AK [auth BB],
AL [auth BW],
BD [auth AA],
BE [auth AA],
BH [auth BA],
BI [auth BA],
BJ [auth BB],
BK [auth BB],
BL [auth A0],
CD [auth AA],
CE [auth AA],
CH [auth BA],
CJ [auth BB],
CL [auth A5],
DD [auth AA],
DE [auth AA],
DH [auth BA],
DJ [auth BB],
ED [auth AA],
EE [auth AA],
EH [auth BA],
EJ [auth BB],
FD [auth AA],
FE [auth AA],
FH [auth BA],
FJ [auth BB],
FL [auth A3],
GD [auth AA],
GE [auth AA],
GH [auth BA],
GJ [auth BB],
HC [auth AA],
HD [auth AA],
HG [auth BA],
HH [auth BA],
HJ [auth BB],
IC [auth AA],
ID [auth AA],
IG [auth BA],
IH [auth BA],
IJ [auth BB],
JC [auth AA],
JD [auth AA],
JG [auth BA],
JH [auth BA],
JJ [auth BB],
JL [auth Bf],
KC [auth AA],
KD [auth AA],
KG [auth BA],
KH [auth BA],
KJ [auth BB],
KL [auth BG],
LC [auth AA],
LD [auth AA],
LG [auth BA],
LH [auth BA],
LJ [auth BB],
LL [auth BG],
MC [auth AA],
MD [auth AA],
MG [auth BA],
MH [auth BA],
MJ [auth BB],
NC [auth AA],
ND [auth AA],
NG [auth BA],
NH [auth BA],
NJ [auth BB],
OC [auth AA],
OD [auth AA],
OG [auth BA],
OH [auth BA],
OJ [auth BB],
PC [auth AA],
PD [auth AA],
PG [auth BA],
PH [auth BA],
PI [auth BB],
PJ [auth BB],
QC [auth AA],
QD [auth AA],
QG [auth BA],
QH [auth BA],
QI [auth BB],
QJ [auth BB],
RC [auth AA],
RD [auth AA],
RG [auth BA],
RH [auth BA],
RI [auth BB],
RJ [auth BB],
SC [auth AA],
SD [auth AA],
SG [auth BA],
SH [auth BA],
SI [auth BB],
SJ [auth BB],
TC [auth AA],
TD [auth AA],
TG [auth BA],
TH [auth BA],
TI [auth BB],
TJ [auth BB],
UC [auth AA],
UD [auth AA],
UG [auth BA],
UH [auth BA],
UI [auth BB],
UJ [auth BB],
VC [auth AA],
VD [auth AA],
VG [auth BA],
VH [auth BA],
VI [auth BB],
VJ [auth BB],
WC [auth AA],
WD [auth AA],
WG [auth BA],
WH [auth BA],
WI [auth BB],
WJ [auth BB],
WK [auth BE],
XC [auth AA],
XD [auth AA],
XG [auth BA],
XH [auth BA],
XI [auth BB],
XJ [auth BB],
XK [auth BE],
YC [auth AA],
YD [auth AA],
YG [auth BA],
YH [auth BA],
YI [auth BB],
YJ [auth BB],
YK [auth BE],
ZC [auth AA],
ZD [auth AA],
ZG [auth BA],
ZH [auth BA],
ZI [auth BB],
ZJ [auth BB],
ZK [auth BR]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
NA
Query on NA

Download Ideal Coordinates CCD File 
AG [auth AA]
BG [auth AA]
CG [auth AA]
DG [auth AA]
EG [auth AA]
AG [auth AA],
BG [auth AA],
CG [auth AA],
DG [auth AA],
EG [auth AA],
EI [auth BA],
FG [auth AA],
FI [auth BA],
GG [auth AA],
GI [auth BA],
GL [auth Bi],
HF [auth AA],
HI [auth BA],
IF [auth AA],
II [auth BA],
IL [auth Be],
JF [auth AA],
JI [auth BA],
KF [auth AA],
KI [auth BA],
KK [auth BB],
LF [auth AA],
LI [auth BA],
LK [auth BB],
MF [auth AA],
MI [auth BA],
MK [auth BB],
NF [auth AA],
NI [auth BA],
NK [auth BB],
OF [auth AA],
OI [auth BA],
OK [auth BB],
PF [auth AA],
PK [auth BB],
QF [auth AA],
QK [auth BB],
RF [auth AA],
RK [auth BB],
SF [auth AA],
SK [auth BB],
TF [auth AA],
TK [auth BB],
UF [auth AA],
UK [auth BC],
VF [auth AA],
VK [auth BD],
WF [auth AA],
XF [auth AA],
YF [auth AA],
ZF [auth AA]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Israel Science FoundationIsrael--
European Research Council (ERC)European Union--

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-29
    Type: Initial release
  • Version 1.1: 2024-04-24
    Changes: Data collection