8OTZ

48-nm repeat of the native axonemal doublet microtubule from bovine sperm

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.0 of the entry. See complete history. 


Literature

Structural specializations of the sperm tail.

Leung, M.R., Zeng, J., Wang, X., Roelofs, M.C., Huang, W., Zenezini Chiozzi, R., Hevler, J.F., Heck, A.J.R., Dutcher, S.K., Brown, A., Zhang, R., Zeev-Ben-Mordehai, T.

(2023) Cell 186: 2880-2896.e17

  • DOI: https://doi.org/10.1016/j.cell.2023.05.026
  • Primary Citation of Related Structures:  
    8OTZ, 8OU0, 8SNB

  • PubMed Abstract: 

    Sperm motility is crucial to reproductive success in sexually reproducing organisms. Impaired sperm movement causes male infertility, which is increasing globally. Sperm are powered by a microtubule-based molecular machine-the axoneme-but it is unclear how axonemal microtubules are ornamented to support motility in diverse fertilization environments. Here, we present high-resolution structures of native axonemal doublet microtubules (DMTs) from sea urchin and bovine sperm, representing external and internal fertilizers. We identify >60 proteins decorating sperm DMTs; at least 15 are sperm associated and 16 are linked to infertility. By comparing DMTs across species and cell types, we define core microtubule inner proteins (MIPs) and analyze evolution of the tektin bundle. We identify conserved axonemal microtubule-associated proteins (MAPs) with unique tubulin-binding modes. Additionally, we identify a testis-specific serine/threonine kinase that links DMTs to outer dense fibers in mammalian sperm. Our study provides structural foundations for understanding sperm evolution, motility, and dysfunction at a molecular level.

    • Organizational Affiliation: 

    Structural Biochemistry, Bijvoet Centre for Biomolecular Research, Utrecht University, 3584 CG Utrecht, the Netherlands.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 95A [auth 0],
KS [auth V]		232Bos taurusMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Sperm acrosome associated 9224Bos taurusMutation(s): 0 
UniProt
Find proteins for A0A3Q1MYU9 (Bos taurus)
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Testis specific serine kinase 6AV [auth x],
N [auth 1],
O [auth 2]		273Bos taurusMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
EF-hand domain-containing proteinBV [auth y],
CV [auth z],
P [auth 3]		275Bos taurusMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
ATP6V1F neighborOB [auth B],
Q [auth A],
VD [auth C]		176Bos taurusMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Outer dense fiber of sperm tails 3 like 1MC [auth BN],
R [auth A0]		274Bos taurusMutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Outer dense fiber of sperm tails 3254Bos taurusMutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin alpha-3 chain
AH [auth DK],
AQ [auth QG],
AR [auth SE],
AS [auth UE],
AT [auth WC],
BA [auth AA],
BC,
BK [auth FM],
BL [auth HK],
BM [auth JG],
BO [auth MM],
BP [auth OI],
CH [auth DM],
CQ [auth QI],
CR [auth SG],
CS [auth UG],
CT [auth WE],
DA [auth AC],
DC [auth BE],
DL [auth HM],
DM [auth JI],
DN [auth LC],
DP [auth OK],
EQ [auth QK],
ER [auth SI],
ES [auth UI],
ET [auth WG],
FA [auth AE],
FC [auth BG],
FK [auth GC],
FL [auth HO],
FM [auth JK],
FN [auth LE],
FO [auth NA],
GE [auth CA],
GP [auth PA],
GQ [auth QM],
GR [auth SK],
GS [auth UK],
GT [auth WI],
HA [auth AG],
HC [auth BI],
HK [auth GE],
HM [auth JM],
HN [auth LG],
HO [auth NC],
IE [auth CC],
IL [auth IC],
IP [auth PC],
IQ [auth RA],
IR [auth SM],
IS [auth UM],
IT [auth WK],
JA [auth AI],
JC [auth BK],
JK [auth GG],
JN [auth LI],
JO [auth NE],
KE [auth CE],
KL [auth IE],
KP [auth PE],
KQ [auth RC],
KT [auth WM],
LA [auth AK],
LC [auth BM],
LI [auth EC],
LK [auth GI],
LN [auth LK],
LO [auth NG],
LR [auth TC],
ME [auth CG],
ML [auth IG],
MM [auth KC],
MP [auth PG],
MQ [auth RE],
MS [auth VC],
NA [auth AM],
NI [auth EE],
NK [auth GK],
NN [auth LM],
NO [auth NI],
NR [auth TE],
OE [auth CI],
OL [auth II],
OM [auth KE],
OP [auth PI],
OQ [auth RG],
OS [auth VE],
PI [auth EG],
PK [auth GM],
PO [auth NK],
PR [auth TG],
QE [auth CK],
QG [auth DA],
QL [auth IK],
QM [auth KG],
QP [auth PK],
QQ [auth RI],
QS [auth VG],
RI [auth EI],
RJ [auth FC],
RN [auth MC],
RR [auth TI],
SE [auth CM],
SG [auth DC],
SL [auth IM],
SM [auth KI],
SP [auth PM],
SQ [auth RK],
SS [auth VI],
TI [auth EK],
TJ [auth FE],
TK [auth HC],
TN [auth ME],
TO [auth OA],
TR [auth TK],
UG [auth DE],
UL [auth IO],
UM [auth KK],
UP [auth QA],
UQ [auth RM],
US [auth VK],
VI [auth EM],
VJ [auth FG],
VK [auth HE],
VN [auth MG],
VO [auth OC],
VR [auth TM],
WG [auth DG],
WM [auth KM],
WP [auth QC],
WQ [auth SA],
WS [auth VM],
XJ [auth FI],
XK [auth HG],
XL [auth JC],
XN [auth MI],
XO [auth OE],
YG [auth DI],
YM [auth KO],
YP [auth QE],
YQ [auth SC],
YR [auth UC],
ZB [auth BA],
ZJ [auth FK],
ZK [auth HI],
ZL [auth JE],
ZN [auth MK],
ZO [auth OG]
450Bos taurusMutation(s): 0 
EC: 3.6.5
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Tubulin beta-4B chain
AC [auth BB],
AK [auth FL],
AL [auth HJ],
AM [auth JF],
AO [auth ML],
AP [auth OH],
BH [auth DL],
BQ [auth QH],
BR [auth SF],
BS [auth UF],
BT [auth WD],
CA [auth AB],
CC [auth BD],
CK [auth FN],
CL [auth HL],
CM [auth JH],
CN [auth LB],
CO [auth MN],
CP [auth OJ],
DH [auth DN],
DQ [auth QJ],
DR [auth SH],
DS [auth UH],
DT [auth WF],
EA [auth AD],
EC [auth BF],
EK [auth GB],
EL [auth HN],
EM [auth JJ],
EN [auth LD],
EO [auth N0],
EP [auth OL],
FQ [auth QL],
FR [auth SJ],
FS [auth UJ],
FT [auth WH],
GA [auth AF],
GC [auth BH],
GK [auth GD],
GM [auth JL],
GN [auth LF],
GO [auth NB],
HE [auth CB],
HL [auth IB],
HP [auth PB],
HR [auth SL],
HS [auth UL],
HT [auth WJ],
IA [auth AH],
IC [auth BJ],
IK [auth GF],
IM [auth JN],
IN [auth LH],
IO [auth ND],
JE [auth CD],
JL [auth ID],
JP [auth PD],
JQ [auth RB],
JS [auth UN],
JT [auth WL],
KA [auth AJ],
KC [auth BL],
KI [auth EB],
KK [auth GH],
KN [auth LJ],
KO [auth NF],
KR [auth TB],
LE [auth CF],
LL [auth IF],
LM [auth KB],
LP [auth PF],
LQ [auth RD],
LS [auth VB],
LT [auth WN],
MA [auth AL],
MI [auth ED],
MK [auth GJ],
MN [auth LL],
MO [auth NH],
MR [auth TD],
NE [auth CH],
NL [auth IH],
NM [auth KD],
NP [auth PH],
NQ [auth RF],
NS [auth VD],
OI [auth EF],
OK [auth GL],
ON [auth LN],
OO [auth NJ],
OR [auth TF],
PE [auth CJ],
PL [auth IJ],
PM [auth KF],
PP [auth PJ],
PQ [auth RH],
PS [auth VF],
QI [auth EH],
QJ [auth FB],
QK [auth GN],
QN [auth MB],
QO [auth NL],
QR [auth TH],
RE [auth CL],
RG [auth DB],
RL [auth IL],
RM [auth KH],
RP [auth PL],
RQ [auth RJ],
RS [auth VH],
SI [auth EJ],
SJ [auth FD],
SK [auth HB],
SN [auth MD],
SO [auth O0],
SR [auth TJ],
TG [auth DD],
TL [auth IN],
TM [auth KJ],
TQ [auth RL],
TS [auth VJ],
UI [auth EL],
UJ [auth FF],
UK [auth HD],
UN [auth MF],
UO [auth OB],
UR [auth TL],
VG [auth DF],
VM [auth KL],
VP [auth QB],
VS [auth VL],
WI [auth EN],
WJ [auth FH],
WK [auth HF],
WL [auth JB],
WN [auth MH],
WO [auth OD],
XG [auth DH],
XM [auth KN],
XP [auth QD],
XQ [auth SB],
XR [auth UB],
XS [auth VN],
YJ [auth FJ],
YK [auth HH],
YL [auth JD],
YN [auth MJ],
YO [auth OF],
ZG [auth DJ],
ZP [auth QF],
ZQ [auth SD],
ZR [auth UD],
ZS [auth WB]
445Bos taurusMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Protein FlattopOA [auth AP],
PA [auth AQ],
QA [auth AR],
RA [auth AS]		196Bos taurusMutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 53SA [auth AT],
TA [auth AU]		514Bos taurusMutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Nucleoside diphosphate kinase 7UA [auth AV],
VA [auth AW]		377Bos taurusMutation(s): 0 
EC: 2.7.4.6
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
EF-hand domain-containing family member C2WA [auth Aa],
XA [auth Ab],
YA [auth Ac],
ZA [auth Ad]		733Bos taurusMutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Family with sequence similarity 166 member A320Bos taurusMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Protein FAM166CEB [auth Ap],
FB [auth Aq],
GB [auth Ar]		201Bos taurusMutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Outer dense fiber of sperm tails 3BHB [auth At],
LB [auth Ax]		303Bos taurusMutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Spermatid-specific manchette-related protein 1304Bos taurusMutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
EnkurinTD [auth By],
UB [auth B5],
UD [auth Bz],
VB [auth B6]		259Bos taurusMutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
Coiled-coil domain-containing protein 105NC [auth BO],
OC [auth BP],
PC [auth BQ],
QC [auth BR]		500Bos taurusMutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
Protein phosphatase 1 regulatory subunit 32RC [auth BS],
SC [auth BT]		428Bos taurusMutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
RIB43A-like with coiled-coils protein 2HD [auth Bi],
ID [auth Bj],
JD [auth Bk],
TC [auth BU],
UC [auth BV]		377Bos taurusMutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 107VC [auth BW],
WC [auth BX]		196Bos taurusMutation(s): 0 
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
Piercer of microtubule wall 1 proteinED [auth Bf],
FD [auth Bg]		136Bos taurusMutation(s): 0 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
Piercer of microtubule wall 2 proteinGD [auth Bh]120Bos taurusMutation(s): 0 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
Stabilizer of axonemal microtubules 1KD [auth Bl],
LD [auth Bm],
MD [auth Bn],
ND [auth Bo],
OD [auth Bp]		477Bos taurusMutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
Stabilizer of axonemal microtubules 3PD [auth Bq],
SD [auth Bu]		338Bos taurusMutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
Meiosis-specific nuclear structural protein 1QD [auth Br],
RD [auth Bs]		495Bos taurusMutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
Tektin-3490Bos taurusMutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
Tektin-5489Bos taurusMutation(s): 1 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
Sperm-associated antigen 8BF [auth CW]484Bos taurusMutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
Spermatogenesis-associated protein 48QF [auth Cl]440Bos taurusMutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
Tektin-1RF [auth Cm],
SF [auth Cn],
TF [auth Co],
UF [auth Cp]		418Bos taurusMutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
Tektin-2430Bos taurusMutation(s): 0 
UniProt
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein C1orf100 homologFG [auth D]138Bos taurusMutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
TEPP proteinJJ [auth Ee],
OH [auth DY],
PH [auth DZ],
QH [auth Da]		216Bos taurusMutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein MGC137036RH [auth Db],
SH [auth Dc],
TH [auth Dd]		192Bos taurusMutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
Testis expressed 33UH [auth De]272Bos taurusMutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
Testis-expressed sequence 37 proteinVH [auth Df],
WH [auth Dg],
XH [auth Dh]		180Bos taurusMutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
Testis-expressed protein 43AI [auth Dk],
BI [auth Dl],
YH [auth Di],
ZH [auth Dj]		133Bos taurusMutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
Testis expressed 49CI [auth Dm]131Bos taurusMutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
Theg spermatid protein likeDI [auth Dn]450Bos taurusMutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
EF-hand domain-containing family member BEI [auth E],
KJ [auth F]		877Bos taurusMutation(s): 0 
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
Tektin bundle interacting protein 1FI [auth E1],
GI [auth E2],
HI [auth E3],
II [auth E4]		208Bos taurusMutation(s): 0 
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
Tektin-4447Bos taurusMutation(s): 0 
UniProt
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
Chromosome 7 open reading frame 31DK [auth G]584Bos taurusMutation(s): 0 
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella- associated protein 210RK [auth H],
RU [auth o]		547Bos taurusMutation(s): 0 
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
EF-hand domain-containing protein 1GL [auth I],
MT [auth X],
UT [auth Y]		640Bos taurusMutation(s): 0 
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein C10orf82 homologJM [auth K],
PN [auth M],
VL [auth J],
ZM [auth L]		235Bos taurusMutation(s): 0 
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 144KM [auth K1]135Bos taurusMutation(s): 0 
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
Chromosome 20 C5orf49 homologAN [auth L1],
BN [auth L2]		147Bos taurusMutation(s): 0 
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
Chromosome 19 C17orf98 homologDO [auth N],
RO [auth O]		154Bos taurusMutation(s): 0 
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
Chromosome 13 C20orf85 homologFP [auth P]137Bos taurusMutation(s): 0 
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 68TP [auth Q]169Bos taurusMutation(s): 0 
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia and flagella associated protein 77HQ [auth R],
JR [auth T],
VQ [auth S],
WR [auth U]		284Bos taurusMutation(s): 0 
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
UPF0602 protein C4orf47 homologYS [auth W]309Bos taurusMutation(s): 1 
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 20193Bos taurusMutation(s): 0 
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
Parkin coregulated gene protein257Bos taurusMutation(s): 0 
UniProt
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
CFAP97 domain containing 1BU [auth Z],
SU [auth p],
TU [auth q]		164Bos taurusMutation(s): 0 
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 45CU [auth a],
DU [auth b],
EU [auth c],
FU [auth d]		549Bos taurusMutation(s): 0 
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 52GU [auth e],
HU [auth f],
IU [auth g]		623Bos taurusMutation(s): 0 
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 141JU [auth h]101Bos taurusMutation(s): 0 
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 161KU [auth i],
LU [auth j]		321Bos taurusMutation(s): 0 
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
Dual specificity phosphatase 21MU [auth k],
OU [auth l],
PU [auth m],
QU [auth n]		196Bos taurusMutation(s): 0 
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein C4orf45 homologNU [auth ke]197Bos taurusMutation(s): 0 
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
Cilia- and flagella-associated protein 276UU [auth r],
VU [auth s],
WU [auth t]		170Bos taurusMutation(s): 0 
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
EF-hand calcium-binding domain-containing protein 3XU [auth u],
YU [auth v],
ZU [auth w]		438Bos taurusMutation(s): 2 
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Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GTP
Query on GTP
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AHA [auth PI]
AKA [auth TI]
AMA [auth WG]
AW [auth BC]
AX [auth CG]
AHA [auth PI],
AKA [auth TI],
AMA [auth WG],
AW [auth BC],
AX [auth CG],
AY [auth DK],
AZ [auth FC],
BBA [auth HL],
BDA [auth KG],
BGA [auth OE],
BIA [auth RA],
BJA [auth SE],
BLA [auth VC],
CAA [auth GI],
CCA [auth JC],
CEA [auth LK],
CHA [auth PK],
CKA [auth TK],
DFA [auth NA],
DMA [auth WI],
DV [auth AA],
DW [auth BE],
DX [auth CH],
DY [auth DM],
DZ [auth FE],
EBA [auth HN],
EDA [auth KI],
EGA [auth OF],
EIA [auth RB],
EJA [auth SF],
ELA [auth VE],
FAA [auth GJ],
FCA [auth JE],
FFA [auth NB],
FHA [auth PM],
FKA [auth TM],
GEA [auth LM],
GMA [auth WK],
GV [auth AC],
GW [auth BG],
GX [auth CJ],
GZ [auth FG],
HBA [auth IC],
HDA [auth KK],
HGA [auth OH],
HHA [auth QA],
HIA [auth RE],
HJA [auth SI],
HLA [auth VG],
HY [auth EC],
IAA [auth GM],
ICA [auth JG],
IFA [auth NE],
IKA [auth UC],
JEA [auth MC],
JMA [auth WM],
JV [auth AD],
JW [auth BI],
JX [auth CL],
JZ [auth FI],
KBA [auth IE],
KDA [auth KM],
KGA [auth OK],
KHA [auth QC],
KIA [auth RG],
KJA [auth SK],
KY [auth EE],
LCA [auth JI],
LFA [auth NF],
LKA [auth UE],
LLA [auth VI],
LX [auth DA],
MAA [auth HC],
MEA [auth ME],
MV [auth AG],
MW [auth BK],
MZ [auth FK],
NBA [auth IG],
NGA [auth PA],
NHA [auth QE],
NIA [auth RI],
NJA [auth SM],
NLA [auth VK],
NY [auth EG],
OCA [auth JK],
ODA [auth KO],
OFA [auth NI],
OKA [auth UG],
OX [auth DC],
PAA [auth HE],
PEA [auth MG],
PV [auth AH],
PW [auth BM],
PZ [auth FM],
QBA [auth II],
QDA [auth LC],
QGA [auth PC],
QHA [auth QG],
QIA [auth RK],
QJA [auth TC],
QLA [auth VL],
QY [auth EI],
RCA [auth JM],
RFA [auth NK],
RKA [auth UI],
RW [auth CA],
RX [auth DE],
SEA [auth MI],
SV [auth AK],
TAA [auth HG],
TBA [auth IK],
TDA [auth LE],
TGA [auth PD],
THA [auth QI],
TIA [auth RM],
TJA [auth TE],
TZ [auth GC],
UKA [auth UK],
ULA [auth WC],
UW [auth CB],
UX [auth DF],
UY [auth EK],
VAA [auth HI],
VCA [auth KC],
VEA [auth MK],
VFA [auth O0],
VIA [auth SA],
VV [auth AM],
WBA [auth IM],
WDA [auth LG],
WGA [auth PG],
WHA [auth QK],
WJA [auth TG],
WY [auth EM],
WZ [auth GE],
XKA [auth UM],
XLA [auth WE],
XV [auth BA],
XW [auth CD],
XX [auth DI],
YAA [auth HK],
YCA [auth KE],
YEA [auth MM],
YFA [auth OC],
YIA [auth SC],
ZBA [auth IN],
ZDA [auth LI],
ZHA [auth QM],
ZZ [auth GG]
GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
GDP
Query on GDP
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ABA [auth HL]
ADA [auth KF]
AFA [auth MN]
AGA [auth OD]
AJA [auth SD]
ABA [auth HL],
ADA [auth KF],
AFA [auth MN],
AGA [auth OD],
AJA [auth SD],
ALA [auth VB],
BAA [auth GH],
BCA [auth JB],
BEA [auth LJ],
BFA [auth N0],
BHA [auth PJ],
BKA [auth TJ],
CMA [auth WH],
CW [auth BD],
CX [auth CH],
CY [auth DL],
CZ [auth FD],
DBA [auth HN],
DDA [auth KH],
DGA [auth OF],
DIA [auth RB],
DJA [auth SF],
DLA [auth VD],
EAA [auth GJ],
ECA [auth JD],
EEA [auth LL],
EFA [auth NB],
EHA [auth PL],
EKA [auth TL],
FMA [auth WJ],
FV [auth AB],
FW [auth BF],
FX [auth CJ],
FY [auth DN],
FZ [auth FF],
GBA [auth IB],
GDA [auth KJ],
GGA [auth OH],
GIA [auth RD],
GJA [auth SH],
GLA [auth VF],
GY [auth EB],
HAA [auth GL],
HCA [auth JF],
HEA [auth LN],
HFA [auth ND],
HKA [auth UB],
IEA [auth MB],
IMA [auth WL],
IV [auth AD],
IW [auth BH],
IX [auth CL],
IZ [auth FH],
JBA [auth ID],
JDA [auth KL],
JGA [auth OJ],
JHA [auth QB],
JIA [auth RF],
JJA [auth SJ],
JLA [auth VH],
JY [auth ED],
KAA [auth GN],
KCA [auth JH],
KFA [auth NF],
KKA [auth UD],
LAA [auth HB],
LEA [auth MD],
LMA [auth WN],
LV [auth AF],
LW [auth BJ],
LZ [auth FJ],
MBA [auth IF],
MDA [auth KN],
MGA [auth OL],
MHA [auth QD],
MIA [auth RH],
MJA [auth SL],
MLA [auth VJ],
MY [auth EF],
NCA [auth JJ],
NFA [auth NH],
NKA [auth UF],
NX [auth DB],
OAA [auth HD],
OEA [auth MF],
OV [auth AH],
OW [auth BL],
OZ [auth FL],
PBA [auth IH],
PDA [auth LB],
PGA [auth PB],
PHA [auth QF],
PIA [auth RJ],
PJA [auth TB],
PLA [auth VL],
PY [auth EH],
QCA [auth JL],
QFA [auth NJ],
QKA [auth UH],
QX [auth DD],
RAA [auth HF],
REA [auth MH],
RV [auth AJ],
RZ [auth FN],
SBA [auth IJ],
SDA [auth LD],
SGA [auth PD],
SHA [auth QH],
SIA [auth RL],
SJA [auth TD],
SLA [auth VN],
SY [auth EJ],
SZ [auth GB],
TCA [auth JN],
TFA [auth NL],
TKA [auth UJ],
TLA [auth WB],
TW [auth CB],
TX [auth DF],
UAA [auth HH],
UCA [auth KB],
UEA [auth MJ],
UFA [auth O0],
UV [auth AL],
VBA [auth IL],
VDA [auth LF],
VGA [auth PF],
VHA [auth QJ],
VJA [auth TF],
VY [auth EL],
VZ [auth GD],
WKA [auth UL],
WLA [auth WD],
WW [auth CD],
WX [auth DH],
XAA [auth HJ],
XCA [auth KD],
XEA [auth ML],
XFA [auth OB],
XIA [auth SB],
YBA [auth IN],
YDA [auth LH],
YGA [auth PH],
YHA [auth QL],
YJA [auth TH],
YY [auth EN],
YZ [auth GF],
ZKA [auth UN],
ZLA [auth WF],
ZV [auth BB],
ZW [auth CF],
ZX [auth DJ],
ZY [auth FB]
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
MG
Query on MG
Download Ideal Coordinates CCD File 
AAA [auth GG]
ACA [auth IO]
AEA [auth LI]
AIA [auth QM]
BMA [auth WG]
AAA [auth GG],
ACA [auth IO],
AEA [auth LI],
AIA [auth QM],
BMA [auth WG],
BW [auth BC],
BX [auth CG],
BY [auth DK],
BZ [auth FC],
CBA [auth HM],
CDA [auth KG],
CFA [auth NA],
CGA [auth OE],
CIA [auth RA],
CJA [auth SE],
CLA [auth VC],
DAA [auth GI],
DCA [auth JC],
DEA [auth LK],
DHA [auth PK],
DKA [auth TK],
EMA [auth WI],
EV [auth AA],
EW [auth BE],
EX [auth CI],
EY [auth DM],
EZ [auth FE],
FBA [auth HO],
FDA [auth KI],
FEA [auth LL],
FGA [auth OG],
FIA [auth RC],
FJA [auth SG],
FLA [auth VE],
GAA [auth GK],
GCA [auth JE],
GFA [auth NC],
GHA [auth PM],
GKA [auth TM],
HMA [auth WK],
HV [auth AC],
HW [auth BG],
HX [auth CK],
HZ [auth FG],
IBA [auth IC],
IDA [auth KK],
IGA [auth OI],
IHA [auth QA],
IIA [auth RE],
IJA [auth SI],
ILA [auth VG],
IY [auth EC],
JAA [auth GM],
JCA [auth JG],
JFA [auth NE],
JKA [auth UC],
KEA [auth MC],
KLA [auth VI],
KMA [auth WM],
KV [auth AE],
KW [auth BI],
KX [auth CM],
KZ [auth FI],
LBA [auth IE],
LDA [auth KM],
LGA [auth OK],
LHA [auth QC],
LIA [auth RG],
LJA [auth SK],
LY [auth EE],
MCA [auth JI],
MFA [auth NG],
MKA [auth UE],
MX [auth DA],
NAA [auth HC],
NDA [auth KN],
NEA [auth ME],
NV [auth AG],
NW [auth BK],
NZ [auth FK],
OBA [auth IG],
OGA [auth PA],
OHA [auth QE],
OIA [auth RI],
OJA [auth SM],
OLA [auth VK],
OY [auth EG],
PCA [auth JK],
PFA [auth NI],
PKA [auth UG],
PX [auth DC],
QAA [auth HE],
QEA [auth MG],
QV [auth AI],
QW [auth BM],
QZ [auth FM],
RBA [auth II],
RDA [auth LC],
RGA [auth PC],
RHA [auth QG],
RIA [auth RK],
RJA [auth TC],
RLA [auth VM],
RY [auth EI],
SAA [auth HG],
SCA [auth JM],
SFA [auth NK],
SKA [auth UI],
SW [auth CA],
SX [auth DE],
TEA [auth MI],
TV [auth AK],
TY [auth EJ],
UBA [auth IK],
UDA [auth LE],
UGA [auth PE],
UHA [auth QI],
UIA [auth RM],
UJA [auth TE],
UZ [auth GC],
VKA [auth UK],
VLA [auth WC],
VW [auth CC],
VX [auth DG],
WAA [auth HI],
WCA [auth KC],
WEA [auth MK],
WFA [auth OA],
WIA [auth SA],
WV [auth AM],
XBA [auth IM],
XDA [auth LG],
XGA [auth PG],
XHA [auth QK],
XJA [auth TG],
XY [auth EM],
XZ [auth GE],
YKA [auth UM],
YLA [auth WE],
YV [auth BA],
YW [auth CE],
YX [auth DI],
ZAA [auth HK],
ZCA [auth KE],
ZEA [auth MM],
ZFA [auth OC],
ZGA [auth PH],
ZIA [auth SC],
ZJA [auth TH]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1

Structure Validation

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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Netherlands Organisation for Scientific Research (NWO)Netherlands740.018.007

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-22
    Type: Initial release