8OK1

WD repeat containing protein 5 (WDR5)- N225A mutant

PDB DOI: https://doi.org/10.2210/pdb8OK1/pdb

Classification: GENE REGULATION
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-03-26 Released: 2024-04-03
Deposition Author(s): Wolf, E., Boergel, A.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.38 Å
R-Value Free: 0.218
R-Value Work: 0.194
R-Value Observed: 0.195

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

A structural competition involving WDR5 times circadian oscillations

Wolf, E., Boergel, A., Rawleigh, A., Conrady, M., Hof, F., Ricci, K., Brown, S.

To be published.

Macromolecule Content

Total Structure Weight: 62.63 kDa
Atom Count: 2,594
Modelled Residue Count: 302
Deposited Residue Count: 555
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase class-mu 26 kDa isozyme,WD repeat-containing protein 5	A	555	Mus musculus	Mutation(s): 0 EC: 2.5.1.18
UniProt
Find proteins for P08515 (Schistosoma japonicum) Explore P08515 Go to UniProtKB: P08515
Find proteins for P61965 (Mus musculus) Explore P61965 Go to UniProtKB: P61965
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	P08515P61965
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.38 Å
R-Value Free: 0.218
R-Value Work: 0.194
R-Value Observed: 0.195
Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.498	α = 90
b = 98.134	β = 90
c = 80.055	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-04-03

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded	Germany	--

Revision History (Full details and data files)

Version 1.0: 2024-04-03
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.