8OK1 | pdb_00008ok1

WD repeat containing protein 5 (WDR5)- N225A mutant

• PDB DOI: https://doi.org/10.2210/pdb8OK1/pdb

• Classification: GENE REGULATION
• Organism(s): Mus musculus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-03-26 Released: 2024-04-03 
• Deposition Author(s): Wolf, E., Boergel, A.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.38 Å
• R-Value Free: 
  0.218 (Depositor), 0.170 (DCC) 
• R-Value Work: 
  0.194 (Depositor), 0.150 (DCC) 
• R-Value Observed: 
  0.195 (Depositor) 

Starting Model: experimental

Literature

A structural competition involving WDR5 times circadian oscillations

Wolf, E., Boergel, A., Rawleigh, A., Conrady, M., Hof, F., Ricci, K., Brown, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 62.63 kDa 
• Atom Count: 2,594 
• Modeled Residue Count: 302 
• Deposited Residue Count: 555 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase class-mu 26 kDa isozyme,WD repeat-containing protein 5	A	555	Mus musculus	Mutation(s): 0  EC: 2.5.1.18
UniProt
Find proteins for P08515 (Schistosoma japonicum) Explore P08515  Go to UniProtKB:  P08515
Find proteins for P61965 (Mus musculus) Explore P61965  Go to UniProtKB:  P61965
UniProt Groups	P08515P61965

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.38 Å
• R-Value Free:  0.218 (Depositor), 0.170 (DCC) 
• R-Value Work:  0.194 (Depositor), 0.150 (DCC) 
• R-Value Observed: 0.195 (Depositor) 

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.498	α = 90
b = 98.134	β = 90
c = 80.055	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-04-03 
Deposition Author(s): Wolf, E., Boergel, A.

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Funding Organization	Location	Grant Number
Not funded	Germany	--

Revision History  

• Version 1.0: 2024-04-03
  Type: Initial release