8OEE

Crystal structure of human AQP2 T126M mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.284 
  • R-Value Work: 0.250 
  • R-Value Observed: 0.252 

wwPDB Validation   3D Report Full Report


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Literature

Structural and functional analysis of aquaporin-2 mutants involved in nephrogenic diabetes insipidus.

Hagstromer, C.J.Hyld Steffen, J.Kreida, S.Al-Jubair, T.Frick, A.Gourdon, P.Tornroth-Horsefield, S.

(2023) Sci Rep 13: 14674-14674

  • DOI: https://doi.org/10.1038/s41598-023-41616-1
  • Primary Citation of Related Structures:  
    8GHJ, 8OEE

  • PubMed Abstract: 

    Aquaporins are water channels found in the cell membrane, where they allow the passage of water molecules in and out of the cells. In the kidney collecting duct, arginine vasopressin-dependent trafficking of aquaporin-2 (AQP2) fine-tunes reabsorption of water from pre-urine, allowing precise regulation of the final urine volume. Point mutations in the gene for AQP2 may disturb this process and lead to nephrogenic diabetes insipidus (NDI), whereby patients void large volumes of highly hypo-osmotic urine. In recessive NDI, mutants of AQP2 are retained in the endoplasmic reticulum due to misfolding. Here we describe the structural and functional characterization of three AQP2 mutations associated with recessive NDI: T125M and T126M, situated close to a glycosylation site and A147T in the transmembrane region. Using a proteoliposome assay, we show that all three mutants permit the transport of water. The crystal structures of T125M and T126M together with biophysical characterization of all three mutants support that they retain the native structure, but that there is a significant destabilization of A147T. Our work provides unique molecular insights into the mechanisms behind recessive NDI as well as deepens our understanding of how misfolded proteins are recognized by the ER quality control system.


  • Organizational Affiliation

    Department of Biochemistry and Structural Biology, Lund University, Lund, Sweden.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Aquaporin-2
A, B, C, D
241Homo sapiensMutation(s): 1 
Gene Names: AQP2
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P41181 (Homo sapiens)
Explore P41181 
Go to UniProtKB:  P41181
PHAROS:  P41181
GTEx:  ENSG00000167580 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP41181
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.15 Å
  • R-Value Free: 0.284 
  • R-Value Work: 0.250 
  • R-Value Observed: 0.252 
  • Space Group: P 42
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 118.94α = 90
b = 118.94β = 90
c = 89.96γ = 90
Software Package:
Software NamePurpose
MxCuBEdata collection
PHENIXrefinement
MOSFLMdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swedish Research CouncilSweden2017-06727
The Crafoord FoundationSweden20180916

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-20
    Type: Initial release