8K1L

Cryo-EM structure of Na+,K+-ATPase alpha2 from Artemia salina in cation-free E2P form


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.44 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

A Na pump with reduced stoichiometry is up-regulated by brine shrimp in extreme salinities.

Artigas, P.Meyer, D.J.Young, V.C.Spontarelli, K.Eastman, J.Strandquist, E.Rui, H.Roux, B.Birk, M.A.Nakanishi, H.Abe, K.Gatto, C.

(2023) Proc Natl Acad Sci U S A 120: e2313999120-e2313999120

  • DOI: https://doi.org/10.1073/pnas.2313999120
  • Primary Citation of Related Structures:  
    8K1L

  • PubMed Abstract: 

    Brine shrimp ( Artemia ) are the only animals to thrive at sodium concentrations above 4 M. Salt excretion is powered by the Na + ,K + -ATPase (NKA), a heterodimeric (αβ) pump that usually exports 3Na + in exchange for 2 K + per hydrolyzed ATP. Artemia express several NKA catalytic α-subunit subtypes. High-salinity adaptation increases abundance of α2 KK , an isoform that contains two lysines (Lys308 and Lys758 in transmembrane segments TM4 and TM5, respectively) at positions where canonical NKAs have asparagines ( Xenopus α1's Asn333 and Asn785). Using de novo transcriptome assembly and qPCR, we found that Artemia express two salinity-independent canonical α subunits (α1 NN and α3 NN ), as well as two β variants, in addition to the salinity-controlled α2 KK . These β subunits permitted heterologous expression of the α2 KK pump and determination of its CryoEM structure in a closed, ion-free conformation, showing Lys758 residing within the ion-binding cavity. We used electrophysiology to characterize the function of α2 KK pumps and compared it to that of Xenopus α1 (and its α2 KK -mimicking single- and double-lysine substitutions). The double substitution N333K/N785K confers α2 KK -like characteristics to Xenopus α1, and mutant cycle analysis reveals energetic coupling between these two residues, illustrating how α2 KK 's Lys308 helps to maintain high affinity for external K + when Lys758 occupies an ion-binding site. By measuring uptake under voltage clamp of the K + -congener 86 Rb + , we prove that double-lysine-substituted pumps transport 2Na + and 1 K + per catalytic cycle. Our results show how the two lysines contribute to generate a pump with reduced stoichiometry allowing Artemia to maintain steeper Na + gradients in hypersaline environments.


  • Organizational Affiliation

    Department of Cell Physiology and Molecular Biophysics, Center for Membrane Protein Research, Texas Tech University Health Sciences Center, Lubbock, TX 79430.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Na+,K+-ATPase alpha2KK996Artemia salinaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P17326 (Artemia franciscana)
Explore P17326 
Go to UniProtKB:  P17326
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP17326
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Na+,K+-ATPase beta2336Artemia salinaMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ALF
Query on ALF

Download Ideal Coordinates CCD File 
C [auth A]TETRAFLUOROALUMINATE ION
Al F4
UYOMQIYKOOHAMK-UHFFFAOYSA-J
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.44 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)Japan21H02426

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-29
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Database references