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 8K1L | pdb_00008k1l

Cryo-EM structure of Na+,K+-ATPase alpha2 from Artemia salina in cation-free E2P form


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.44 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 8K1L

This is version 1.3 of the entry. See complete history. 

Literature

A Na pump with reduced stoichiometry is up-regulated by brine shrimp in extreme salinities.

Artigas, P., Meyer, D.J., Young, V.C., Spontarelli, K., Eastman, J., Strandquist, E., Rui, H., Roux, B., Birk, M.A., Nakanishi, H., Abe, K., Gatto, C.

(2023) Proc Natl Acad Sci U S A 120: e2313999120-e2313999120

  • DOI: https://doi.org/10.1073/pnas.2313999120
  • Primary Citation Related Structures: 
    8K1L

  • PubMed Abstract: 

    Brine shrimp ( Artemia ) are the only animals to thrive at sodium concentrations above 4 M. Salt excretion is powered by the Na + ,K + -ATPase (NKA), a heterodimeric (αβ) pump that usually exports 3Na + in exchange for 2 K + per hydrolyzed ATP. Artemia express several NKA catalytic α-subunit subtypes. High-salinity adaptation increases abundance of α2 KK , an isoform that contains two lysines (Lys308 and Lys758 in transmembrane segments TM4 and TM5, respectively) at positions where canonical NKAs have asparagines ( Xenopus α1's Asn333 and Asn785). Using de novo transcriptome assembly and qPCR, we found that Artemia express two salinity-independent canonical α subunits (α1 NN and α3 NN ), as well as two β variants, in addition to the salinity-controlled α2 KK . These β subunits permitted heterologous expression of the α2 KK pump and determination of its CryoEM structure in a closed, ion-free conformation, showing Lys758 residing within the ion-binding cavity. We used electrophysiology to characterize the function of α2 KK pumps and compared it to that of Xenopus α1 (and its α2 KK -mimicking single- and double-lysine substitutions). The double substitution N333K/N785K confers α2 KK -like characteristics to Xenopus α1, and mutant cycle analysis reveals energetic coupling between these two residues, illustrating how α2 KK 's Lys308 helps to maintain high affinity for external K + when Lys758 occupies an ion-binding site. By measuring uptake under voltage clamp of the K + -congener 86 Rb + , we prove that double-lysine-substituted pumps transport 2Na + and 1 K + per catalytic cycle. Our results show how the two lysines contribute to generate a pump with reduced stoichiometry allowing Artemia to maintain steeper Na + gradients in hypersaline environments.


  • Organizational Affiliation: 
    • Department of Cell Physiology and Molecular Biophysics, Center for Membrane Protein Research, Texas Tech University Health Sciences Center, Lubbock, TX 79430.

Macromolecule Content 

  • Total Structure Weight: 149.74 kDa 
  • Atom Count: 10,026 
  • Modeled Residue Count: 1,271 
  • Deposited Residue Count: 1,332 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Na+,K+-ATPase alpha2KK996Artemia salinaMutation(s): 0 
EC: 7.2.2.13
Membrane Entity: Yes 
UniProt
Find proteins for P17326 (Artemia franciscana)
Explore P17326 
Go to UniProtKB:  P17326
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP17326
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Na+,K+-ATPase beta2336Artemia salinaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for A0AAJ6N6I4 (Artemia salina)
Explore A0AAJ6N6I4 
Go to UniProtKB:  A0AAJ6N6I4
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0AAJ6N6I4
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ALF

Query on ALF



Download:Ideal Coordinates CCD File
C [auth A]TETRAFLUOROALUMINATE ION
Al F4
UYOMQIYKOOHAMK-UHFFFAOYSA-J

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.44 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)Japan21H02426

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-29
    Type: Initial release
  • Version 1.1: 2024-01-31
    Changes: Database references
  • Version 1.2: 2024-10-16
    Changes: Data collection, Structure summary
  • Version 1.3: 2026-08-12
    Type: Remediation
    Reason: Metalloprotein remediation
    Changes: Data collection, Derived calculations, Structure summary