8JBI | pdb_00008jbi

SteC 202-375 mutant- C276S

PDB DOI: https://doi.org/10.2210/pdb8JBI/pdb

Classification: TRANSFERASE
Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2023-05-09 Released: 2024-02-28
Deposition Author(s): Zhang, M., Dai, Y., Li, B.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.36 Å
R-Value Free:
0.242 (Depositor), 0.268 (DCC)
R-Value Work:
0.195 (Depositor), 0.227 (DCC)
R-Value Observed:
0.197 (Depositor)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Salmonella manipulates macrophage cytoskeleton to penetrate gut-vascular barrier and promote dissemination during infection

Zhang, M., Dai, Y., Li, B.

To be published.

Macromolecule Content

Total Structure Weight: 80.43 kDa
Atom Count: 5,158
Modeled Residue Count: 612
Deposited Residue Count: 696
Unique protein chains: 1

Macromolecules

Find similar proteins by:

| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Secreted effector kinase SteC	A [auth D], B [auth A], C [auth B], D [auth C]	174	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S	Mutation(s): 1 Gene Names: steC, STM14_2050 EC: 2.7
UniProt
Find proteins for D0ZIB5 (Salmonella typhimurium (strain 14028s / SGSC 2262)) Explore D0ZIB5 Go to UniProtKB: D0ZIB5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	D0ZIB5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
AMP (Subject of Investigation/LOI) Query on AMP Download:Ideal Coordinates CCD File SDF format, chain K [auth C] SDF format, chain I [auth B] SDF format, chain G [auth A] SDF format, chain E [auth D] MOL2 format, chain K [auth C] MOL2 format, chain I [auth B] MOL2 format, chain G [auth A] MOL2 format, chain E [auth D] mmCIF format, chain K [auth C] mmCIF format, chain I [auth B] mmCIF format, chain G [auth A] mmCIF format, chain E [auth D]	E [auth D], G [auth A], I [auth B], K [auth C]	ADENOSINE MONOPHOSPHATE C₁₀ H₁₄ N₅ O₇ P UDMBCSSLTHHNCD-KQYNXXCUSA-N		Interactions Focus chain E [auth D] Focus chain G [auth A] Focus chain I [auth B] Focus chain K [auth C] Interactions & Density Focus chain E [auth D] Focus chain G [auth A] Focus chain I [auth B] Focus chain K [auth C]
MG (Subject of Investigation/LOI) Query on MG Download:Ideal Coordinates CCD File SDF format, chain L [auth C] SDF format, chain M [auth C] SDF format, chain J [auth B] SDF format, chain H [auth A] SDF format, chain F [auth D] MOL2 format, chain L [auth C] MOL2 format, chain M [auth C] MOL2 format, chain J [auth B] MOL2 format, chain H [auth A] MOL2 format, chain F [auth D] mmCIF format, chain L [auth C] mmCIF format, chain M [auth C] mmCIF format, chain J [auth B] mmCIF format, chain H [auth A] mmCIF format, chain F [auth D]	F [auth D], H [auth A], J [auth B], L [auth C], M [auth C]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain F [auth D] Focus chain H [auth A] Focus chain J [auth B] Focus chain L [auth C] Focus chain M [auth C] Interactions & Density Focus chain F [auth D] Focus chain H [auth A] Focus chain J [auth B] Focus chain L [auth C] Focus chain M [auth C]