8I6I | pdb_00008i6i

Crystal structure of cyclohexylamine oxidase from Acinetobacter sp. YT-02

PDB DOI: https://doi.org/10.2210/pdb8I6I/pdb

Classification: FLAVOPROTEIN
Organism(s): Acinetobacter sp. YT-02
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-01-28 Released: 2024-09-04
Deposition Author(s): Han, Z., Yan, D.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.49 Å
R-Value Free:
0.189 (Depositor), 0.196 (DCC)
R-Value Work:
0.162 (Depositor), 0.171 (DCC)
R-Value Observed:
0.164 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of cyclohexylamine oxidase from Acinetobacter sp. YT-02

Han, Z.

To be published.

Macromolecule Content

Total Structure Weight: 98.65 kDa
Atom Count: 7,862
Modeled Residue Count: 896
Deposited Residue Count: 896
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Amine oxidase	A, B [auth C]	448	Acinetobacter sp. YT-02	Mutation(s): 0 Gene Names: CF596_10820
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FAD (Subject of Investigation/LOI) Query on FAD Download Ideal Coordinates CCD File SDF format, chain D [auth C] SDF format, chain C [auth A] MOL2 format, chain D [auth C] MOL2 format, chain C [auth A] mmCIF format, chain D [auth C] mmCIF format, chain C [auth A]	C [auth A], D [auth C]	FLAVIN-ADENINE DINUCLEOTIDE C₂₇ H₃₃ N₉ O₁₅ P₂ VWWQXMAJTJZDQX-UYBVJOGSSA-N		Interactions Focus chain C [auth A] Focus chain D [auth C] Interactions & Density Focus chain C [auth A] Focus chain D [auth C]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.49 Å
R-Value Free: 0.189 (Depositor), 0.196 (DCC)
R-Value Work: 0.162 (Depositor), 0.171 (DCC)
R-Value Observed: 0.164 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 109.686	α = 90
b = 129.372	β = 90
c = 167.385	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

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Ligand Structure Quality Assessment

Entry History & Funding Information

Deposition Data

Released Date: 2024-09-04

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2024-09-04
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.