8I6I | pdb_00008i6i

Crystal structure of cyclohexylamine oxidase from Acinetobacter sp. YT-02

PDB DOI: https://doi.org/10.2210/pdb8I6I/pdb

Classification: FLAVOPROTEIN
Organism(s): Acinetobacter sp. YT-02
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-01-28 Released: 2024-09-04
Deposition Author(s): Han, Z., Yan, D.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.49 Å
R-Value Free:
0.189 (Depositor), 0.196 (DCC)
R-Value Work:
0.162 (Depositor), 0.171 (DCC)
R-Value Observed:
0.164 (Depositor)

Starting Model: experimental
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Ligand Structure Quality Assessment

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Literature

Crystal structure of cyclohexylamine oxidase from Acinetobacter sp. YT-02

Han, Z.

To be published.

Macromolecule Content

Total Structure Weight: 98.65 kDa
Atom Count: 7,862
Modeled Residue Count: 896
Deposited Residue Count: 896
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Amine oxidase	A, B [auth C]	448	Acinetobacter sp. YT-02	Mutation(s): 0 Gene Names: CF596_10820

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FAD (Subject of Investigation/LOI) Query on FAD Download:Ideal Coordinates CCD File SDF format, chain D [auth C] SDF format, chain C [auth A] MOL2 format, chain D [auth C] MOL2 format, chain C [auth A] mmCIF format, chain D [auth C] mmCIF format, chain C [auth A]	C [auth A], D [auth C]	FLAVIN-ADENINE DINUCLEOTIDE C₂₇ H₃₃ N₉ O₁₅ P₂ VWWQXMAJTJZDQX-UYBVJOGSSA-N		Interactions Focus chain C [auth A] Focus chain D [auth C] Interactions & Density Focus chain C [auth A] Focus chain D [auth C]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.49 Å
R-Value Free: 0.189 (Depositor), 0.196 (DCC)
R-Value Work: 0.162 (Depositor), 0.171 (DCC)
R-Value Observed: 0.164 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 109.686	α = 90
b = 129.372	β = 90
c = 167.385	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-09-04

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2024-09-04
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.