8HTB

Staphylococcus aureus FtsZ 12-316 complexed with TXH9179


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
  • R-Value Free: 0.186 
  • R-Value Work: 0.155 
  • R-Value Observed: 0.156 

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Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Structural and Antibacterial Characterization of a New Benzamide FtsZ Inhibitor with Superior Bactericidal Activity and In Vivo Efficacy Against Multidrug-Resistant Staphylococcus aureus.

Bryan, E.Ferrer-Gonzalez, E.Sagong, H.Y.Fujita, J.Mark, L.Kaul, M.LaVoie, E.J.Matsumura, H.Pilch, D.S.

(2023) ACS Chem Biol 18: 629-642

  • DOI: https://doi.org/10.1021/acschembio.2c00934
  • Primary Citation of Related Structures:  
    8HTB

  • PubMed Abstract: 

    Methicillin-resistant Staphylococcus aureus (MRSA) is a multidrug-resistant (MDR) bacterial pathogen of acute clinical significance. Resistance to current standard-of-care antibiotics, such as vancomycin and linezolid, among nosocomial and community-acquired MRSA clinical isolates is on the rise. This threat to global public health highlights the need to develop new antibiotics for the treatment of MRSA infections. Here, we describe a new benzamide FtsZ inhibitor (TXH9179) with superior antistaphylococcal activity relative to earlier-generation benzamides like PC190723 and TXA707. TXH9179 was found to be 4-fold more potent than TXA707 against a library of 55 methicillin-sensitive S. aureus (MSSA) and MRSA clinical isolates, including MRSA isolates resistant to vancomycin and linezolid. TXH9179 was also associated with a lower frequency of resistance relative to TXA707 in all but one of the MSSA and MRSA isolates examined, with the observed resistance being due to mutations in the ftsZ gene. TXH9179 induced changes in MRSA cell morphology, cell division, and FtsZ localization are fully consistent with its actions as a FtsZ inhibitor. Crystallographic studies demonstrate the direct interaction of TXH9179 with S. aureus FtsZ (SaFtsZ), while delineating the key molecular contacts that drive complex formation. TXH9179 was not associated with any mammalian cytotoxicity, even at a concentration 10-fold greater than that producing antistaphylococcal activity. In serum, the carboxamide prodrug of TXH9179 (TXH1033) is rapidly hydrolyzed to TXH9179 by serum acetylcholinesterases. Significantly, both intravenously and orally administered TXH1033 exhibited enhanced in vivo efficacy relative to the carboxamide prodrug of TXA707 (TXA709) in treating a mouse model of systemic (peritonitis) MRSA infection. Viewed as a whole, our results highlight TXH9179 as a promising new benzamide FtsZ inhibitor worthy of further development.


  • Organizational Affiliation

    Department of Pharmacology, Rutgers Robert Wood Johnson Medical School, 675 Hoes Lane, Piscataway, New Jersey 08854, United States.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cell division protein FtsZ308Staphylococcus aureusMutation(s): 0 
Gene Names: ftsZSAR1162
UniProt
Find proteins for Q6GHP9 (Staphylococcus aureus (strain MRSA252))
Explore Q6GHP9 
Go to UniProtKB:  Q6GHP9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6GHP9
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GDP
Query on GDP

Download Ideal Coordinates CCD File 
B [auth A]GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
ZI9 (Subject of Investigation/LOI)
Query on ZI9

Download Ideal Coordinates CCD File 
D [auth A]3-[(6-ethynyl-[1,3]thiazolo[5,4-b]pyridin-2-yl)methoxy]-2,6-bis(fluoranyl)benzamide
C16 H9 F2 N3 O2 S
SCUOMBYZGFZRIF-UHFFFAOYSA-N
CA
Query on CA

Download Ideal Coordinates CCD File 
C [auth A]CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
  • R-Value Free: 0.186 
  • R-Value Work: 0.155 
  • R-Value Observed: 0.156 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 70.445α = 90
b = 51.54β = 108.33
c = 86.292γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PHENIXrefinement
SCALEPACKdata scaling
HKL-2000data reduction
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI118874
Japan Society for the Promotion of Science (JSPS)Japan15J00589
Japan Society for the Promotion of Science (JSPS)Japan16H00783
Japan Society for the Promotion of Science (JSPS)Japan18K06094
Japan Society for the Promotion of Science (JSPS)Japan19H04735
Japan Society for the Promotion of Science (JSPS)Japan19K07582
Takeda Science FoundationJapan--
The Promotion and Mutual Aid Corporation for Private Schools of JapanJapan--
Institute for Protein Research, Osaka UniversityJapanCR-18-05
Institute for Protein Research, Osaka UniversityJapanCR-19-05
Japan Agency for Medical Research and Development (AMED)JapanJP19am0101070

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-20
    Type: Initial release