8HR3 | pdb_00008hr3

[D-Cys5,Asp7,Val8,D-Lys16]-STp(5-17)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 8HR3

This is version 1.1 of the entry. See complete history

Literature

The Molecular Basis of Heat-Stable Enterotoxin for Vaccine Development and Cancer Cell Detection.

Goto, M.Yoshino, S.Hiroshima, K.Kawakami, T.Murota, K.Shimamoto, S.Hidaka, Y.

(2023) Molecules 28

  • DOI: https://doi.org/10.3390/molecules28031128
  • Primary Citation Related Structures: 
    8HR3

  • PubMed Abstract: 

    Heat-stable enterotoxin (ST a ) produced by Enterotoxigenic E. coli is responsible for causing acute diarrhea in infants in developing countries. However, the chemical synthesis of ST a peptides with the native conformation and the correct intra-molecular disulfide bonds is a major hurdle for vaccine development. To address this issue, we herein report on the design and preparation of ST a analogs and a convenient chemical method for obtaining ST a molecules with the correct conformation. To develop an ST a vaccine, we focused on a structure in a type II β-turn in the ST a molecule and introduced a D-Lys residue as a conjugation site for carrier proteins. In addition, the -Glu-Leu- sequence in the ST a molecule was replaced with a -Asp-Val- sequence to decrease the toxic activity of the peptide to make it more amenable for use in vaccinations. To solve several issues associated with the synthesis of ST a , such as the formation of non-native disulfide isomers, the native disulfide pairings were regioselectively formed in a stepwise manner. A native form or topological isomer of the designed ST a peptide, which possesses a right-handed or a left-handed spiral structure, respectively, were synthesized in high synthetic yields. The conformation of the synthetic ST a peptide was also confirmed by CD and NMR spectroscopy. To further utilize the designed ST a peptide, it was labeled with fluorescein for fluorescent detection, since recent studies have also focused on the use of ST a for detecting cancer cells, such as Caco-2 and T84. The labeled ST a peptide was able to specifically and efficiently detect 293T cells expressing the recombinant ST a receptor (GC-C) protein and Caco-2 cells. The findings reported here provide an outline of the molecular basis for using ST a for vaccine development and in the detection of cancer cells.


  • Organizational Affiliation
    • Faculty of Science and Engineering, Kindai University, 3-4-1 Kowakae, Higashi-Osaka, Osaka 577-8502, Japan.

Macromolecule Content 

  • Total Structure Weight: 1.33 kDa 
  • Atom Count: 86 
  • Modeled Residue Count: 13 
  • Deposited Residue Count: 13 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
DCY-CYS-ASP-VAL-CYS-CYS-ASN-PRO-ALA-CYS-ALA-DLY-CYS13Escherichia coliMutation(s): 0 

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)Japan16K01925

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-20
    Type: Initial release
  • Version 1.1: 2024-11-13
    Changes: Database references, Structure summary