8HR3 | pdb_00008hr3

[D-Cys5,Asp7,Val8,D-Lys16]-STp(5-17)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The Molecular Basis of Heat-Stable Enterotoxin for Vaccine Development and Cancer Cell Detection.

Goto, M.Yoshino, S.Hiroshima, K.Kawakami, T.Murota, K.Shimamoto, S.Hidaka, Y.

(2023) Molecules 28

  • DOI: https://doi.org/10.3390/molecules28031128
  • Primary Citation of Related Structures:  
    8HR3

  • PubMed Abstract: 

    Heat-stable enterotoxin (ST a ) produced by Enterotoxigenic E. coli is responsible for causing acute diarrhea in infants in developing countries. However, the chemical synthesis of ST a peptides with the native conformation and the correct intra-molecular disulfide bonds is a major hurdle for vaccine development. To address this issue, we herein report on the design and preparation of ST a analogs and a convenient chemical method for obtaining ST a molecules with the correct conformation. To develop an ST a vaccine, we focused on a structure in a type II β-turn in the ST a molecule and introduced a D-Lys residue as a conjugation site for carrier proteins. In addition, the -Glu-Leu- sequence in the ST a molecule was replaced with a -Asp-Val- sequence to decrease the toxic activity of the peptide to make it more amenable for use in vaccinations. To solve several issues associated with the synthesis of ST a , such as the formation of non-native disulfide isomers, the native disulfide pairings were regioselectively formed in a stepwise manner. A native form or topological isomer of the designed ST a peptide, which possesses a right-handed or a left-handed spiral structure, respectively, were synthesized in high synthetic yields. The conformation of the synthetic ST a peptide was also confirmed by CD and NMR spectroscopy. To further utilize the designed ST a peptide, it was labeled with fluorescein for fluorescent detection, since recent studies have also focused on the use of ST a for detecting cancer cells, such as Caco-2 and T84. The labeled ST a peptide was able to specifically and efficiently detect 293T cells expressing the recombinant ST a receptor (GC-C) protein and Caco-2 cells. The findings reported here provide an outline of the molecular basis for using ST a for vaccine development and in the detection of cancer cells.


  • Organizational Affiliation
    • Faculty of Science and Engineering, Kindai University, 3-4-1 Kowakae, Higashi-Osaka, Osaka 577-8502, Japan.

Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DCY-CYS-ASP-VAL-CYS-CYS-ASN-PRO-ALA-CYS-ALA-DLY-CYS13Escherichia coliMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 10 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)Japan16K01925

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-20
    Type: Initial release
  • Version 1.1: 2024-11-13
    Changes: Database references, Structure summary