8HP2

CtPDC

• PDB DOI: https://doi.org/10.2210/pdb8HP2/pdb

• Classification: LYASE
• Organism(s): Candida tropicalis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-12-11 Released: 2024-01-17 
• Deposition Author(s): Xu, H.H., Song, W.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.05 Å
• R-Value Free: 0.285 
• R-Value Work: 0.233 
• R-Value Observed: 0.235 

Literature

Protein engineering of pyruvate decarboxylase to remove the rate-limiting bottleneck in the cascade pathway of tyrosol synthesis

Xu, H.H., Song, W.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 124.51 kDa 
• Atom Count: 7,392 
• Modelled Residue Count: 956 
• Deposited Residue Count: 1,134 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Pyruvate decarboxylase	A, B	567	Candida tropicalis	Mutation(s): 0  Gene Names: CTRG_03826
UniProt
Find proteins for C5MDS4 (Candida tropicalis (strain ATCC MYA-3404 / T1)) Explore C5MDS4  Go to UniProtKB:  C5MDS4

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.05 Å
• R-Value Free: 0.285 
• R-Value Work: 0.233 
• R-Value Observed: 0.235 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 123.471	α = 90
b = 85.295	β = 120.71
c = 113.534	γ = 90

Software Package:

Software Name	Purpose
Aimless	data scaling
REFMAC	refinement

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-01-17 
Deposition Author(s): Xu, H.H., Song, W.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-01-17
  Type: Initial release