Immune escape at SARS- CoV-2 killer T cell epitope
Deng, S.S., Jin, T.C., Xu, Z.H.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
MHC class I antigen | 308 | Homo sapiens | Mutation(s): 0  Gene Names: HLA-A | ||
UniProt | |||||
Find proteins for F6IR24 (Homo sapiens) Explore F6IR24  Go to UniProtKB:  F6IR24 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | F6IR24 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-2-microglobulin | 100 | Homo sapiens | Mutation(s): 0  Gene Names: B2M, CDABP0092, HDCMA22P | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61769 (Homo sapiens) Explore P61769  Go to UniProtKB:  P61769 | |||||
PHAROS:  P61769 GTEx:  ENSG00000166710  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P61769 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
SARS-CoV-2 T-cell epitope QYIKWPWYI | C [auth E] | 9 | Severe acute respiratory syndrome coronavirus 2 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P0DTC2 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTC2  Go to UniProtKB:  P0DTC2 | |||||
Entity Groups   | |||||
UniProt Group | P0DTC2 | ||||
Sequence AnnotationsExpand | |||||
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Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 49.066 | α = 90 |
b = 67.246 | β = 90 |
c = 116.79 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Natural Science Foundation of China (NSFC) | China | 82272301 |