8HN0

Crystal structure of N-terminal fragment (20-132aa) of human SCARF1

PDB DOI: https://doi.org/10.2210/pdb8HN0/pdb

Classification: LIPID BINDING PROTEIN
Organism(s): Homo sapiens
Expression System: Trichoplusia ni
Mutation(s): No

Deposited: 2022-12-06 Released: 2023-12-20
Deposition Author(s): Wang, Y., He, Y.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.252
R-Value Work: 0.219
R-Value Observed: 0.223

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of the f1 of SCARF1

Wang, Y., He, Y.

To be published.

Macromolecule Content

Total Structure Weight: 26.67 kDa
Atom Count: 1,729
Modelled Residue Count: 224
Deposited Residue Count: 242
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Scavenger receptor class F member 1	A, B	121	Homo sapiens	Mutation(s): 0 Gene Names: SCARF1, KIAA0149, SREC
UniProt & NIH Common Fund Data Resources
Find proteins for Q14162 (Homo sapiens) Explore Q14162 Go to UniProtKB: Q14162
PHAROS: Q14162 GTEx: ENSG00000074660
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q14162
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.252
R-Value Work: 0.219
R-Value Observed: 0.223
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.014	α = 90
b = 50.702	β = 90
c = 110.744	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-3000	data reduction
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-12-20

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	No.91957102

Revision History (Full details and data files)

Version 1.0: 2023-12-20
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.