8HKV

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.94 Å
  • Aggregation State: 2D ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Wang, Y.H., Zhou, J.

To be published.

Macromolecules

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L2C [auth AL2P]234Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for Q4JB43 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L3D [auth AL3P]339Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for Q4JB40 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L4E [auth AL4P]251Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L5F [auth AL5P]168Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for P41202 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L6G [auth AL6P]181Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L18AeH [auth ALX0]76Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L10eI [auth L10E]164Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for Q4JC84 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L13J [auth L13P]140Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L14eK [auth L141],
L [auth L142]		86Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L14M [auth L14P]134Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L15eN [auth L15E]169Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for Q4JB20 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L18eO [auth L18E]112Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L18P [auth L18P]193Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L19eQ [auth L19E]144Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L22R [auth L22P]150Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for Q4JB45 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L23S [auth L23P]81Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L24eT [auth L24E]54Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for Q4JAV2 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L24U [auth L24P]122Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for O05633 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L29V [auth L29P]63Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for Q4JB47 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L30eW [auth L30E]94Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for P11522 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L30X [auth L30P]155Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for O05642 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L31eY [auth L31E]75Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for P38618 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L32eZ [auth L32E]123Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L34eAA [auth L34E]77Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for O05981 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L37AeBA [auth L37A]65Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L37eCA [auth L37E]54Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for Q4JAZ9 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L39eDA [auth L39E]49Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for P13005 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L40EEA [auth L40E]55Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for Q4JAP0 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L44eFA [auth L44E]92Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for Q4J9B2 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L7AeGA [auth L7A1],
HA [auth L7A2]		123Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for Q4J8P1 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L15IA [auth L15P]144Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L21eJA [auth L21E]97Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for Q4JB11 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
DUF2280 domain-containing proteinKA [auth L45A]101Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for Q4J9G6 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
Conserved proteinLA [auth L46A]70Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for Q4J953 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L47AMA [auth L47A]80Sulfolobus acidocaldarius DSM 639Mutation(s): 0 
UniProt
Find proteins for F2Z6C4 (Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770))
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Entity ID: 1
MoleculeChains LengthOrganismImage
23s rRNA (2996-MER)A [auth A23S]3,022Sulfolobus acidocaldarius DSM 639
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Entity ID: 2
MoleculeChains LengthOrganismImage
5s rRNA (122-MER)B [auth A5S]122Sulfolobus acidocaldarius DSM 639
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.94 Å
  • Aggregation State: 2D ARRAY 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China31971226

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-16
    Type: Initial release