8GF7

Cryo-EM structure of serine 87 O-GlcNAc-modified alpha-synuclein fibrils

  • Classification: PROTEIN FIBRIL
  • Organism(s): Homo sapiens
  • Mutation(s): No 

  • Deposited: 2023-03-07 Released: 2023-11-08 
  • Deposition Author(s): Balana, J.A., Nguyen, A.B., Saelices, L., Pratt, R.M.
  • Funding Organization(s): Michael J. Fox Foundation, National Institutes of Health/Office of the Director, National Institutes of Health/National Institute on Aging (NIH/NIA), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), Department of Energy (DOE, United States), Cancer Prevention and Research Institute of Texas (CPRIT)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.80 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

O-GlcNAc forces an alpha-synuclein amyloid strain with notably diminished seeding and pathology.

Balana, A.T.Mahul-Mellier, A.L.Nguyen, B.A.Horvath, M.Javed, A.Hard, E.R.Jasiqi, Y.Singh, P.Afrin, S.Pedretti, R.Singh, V.Lee, V.M.Luk, K.C.Saelices, L.Lashuel, H.A.Pratt, M.R.

(2024) Nat Chem Biol 

  • DOI: https://doi.org/10.1038/s41589-024-01551-2
  • Primary Citation of Related Structures:  
    8GF7

  • PubMed Abstract: 

    Amyloid-forming proteins such α-synuclein and tau, which are implicated in Alzheimer's and Parkinson's disease, can form different fibril structures or strains with distinct toxic properties, seeding activities and pathology. Understanding the determinants contributing to the formation of different amyloid features could open new avenues for developing disease-specific diagnostics and therapies. Here we report that O-GlcNAc modification of α-synuclein monomers results in the formation of amyloid fibril with distinct core structure, as revealed by cryogenic electron microscopy, and diminished seeding activity in seeding-based neuronal and rodent models of Parkinson's disease. Although the mechanisms underpinning the seeding neutralization activity of the O-GlcNAc-modified fibrils remain unclear, our in vitro mechanistic studies indicate that heat shock proteins interactions with O-GlcNAc fibril inhibit their seeding activity, suggesting that the O-GlcNAc modification may alter the interactome of the α-synuclein fibrils in ways that lead to reduce seeding activity in vivo. Our results show that posttranslational modifications, such as O-GlcNAc modification, of α-synuclein are key determinants of α-synuclein amyloid strains and pathogenicity.


  • Organizational Affiliation

    Department of Chemistry, University of Southern California, Los Angeles, CA, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Alpha-synuclein
A, B, C, D, E
A, B, C, D, E, F
90Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P37840 (Homo sapiens)
Explore P37840 
Go to UniProtKB:  P37840
PHAROS:  P37840
GTEx:  ENSG00000145335 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP37840
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.80 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTPHENIX20.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Michael J. Fox FoundationUnited StatesMJFF-008121
National Institutes of Health/Office of the DirectorUnited StatesOD020103-01
National Institutes of Health/Office of the DirectorUnited StatesOD021685-01A1
National Institutes of Health/National Institute on Aging (NIH/NIA)United StatesAG062418
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM114537
Department of Energy (DOE, United States)United StatesDE-AC02-76SF00515
Cancer Prevention and Research Institute of Texas (CPRIT)United StatesRP170644

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-08
    Type: Initial release
  • Version 1.1: 2024-02-28
    Changes: Database references