8DMJ | pdb_00008dmj

Postfusion Nipah virus fusion protein in complex with Fab 1H1

• PDB DOI: https://doi.org/10.2210/pdb8DMJ/pdb
• EM Map EMD-27541: EMDB EMDataResource

• Classification: VIRAL PROTEIN/Immune System
• Organism(s): Henipavirus nipahense, Mus musculus
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2022-07-08 Released: 2023-07-12 
• Deposition Author(s): Byrne, P.O., Blade, E.G., McLellan, J.S.
• Funding Organization(s): Welch Foundation

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.20 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Postfusion Nipah virus fusion protein in complex with Fab 1H1

Byrne, P.O., Blade, E.G., McLellan, J.S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 7-mer - A3B2C2 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 7-mer - A4B3 Local Symmetry: Cyclic - C3  (Explore in 3D)
Local Stoichiometry: Homo 3-mer - A3 

Local Symmetry: Cyclic - C3  (Explore in 3D)
Local Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 225.37 kDa 
• Atom Count: 11,030 
• Modeled Residue Count: 1,425 
• Deposited Residue Count: 2,043 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fusion glycoprotein F0,Fusion glycoprotein F1	A, B, C	529	Henipavirus nipahense	Mutation(s): 0
UniProt
Find proteins for Q9IH63 (Nipah virus) Explore Q9IH63  Go to UniProtKB:  Q9IH63

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
antibody 1H1 heavy chain	D, F [auth H]	121	Mus musculus	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
antibody 1H1 light chain	E, G [auth L]	107	Mus musculus	Mutation(s): 0

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.20 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-07-12 
Deposition Author(s): Byrne, P.O., Blade, E.G., McLellan, J.S.

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Funding Organization	Location	Grant Number
Welch Foundation	United States	F-0003-19620604

Revision History  

• Version 1.0: 2023-07-12
  Type: Initial release
  
• Version 1.1: 2024-10-16
  Changes: Data collection, Structure summary