8DMI

Lymphocytic choriomeningitis virus glycoprotein


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.26 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis for antibody-mediated neutralization of lymphocytic choriomeningitis virus.

Moon-Walker, A.Zhang, Z.Zyla, D.S.Buck, T.K.Li, H.Diaz Avalos, R.Schendel, S.L.Hastie, K.M.Crotty, S.Saphire, E.O.

(2023) Cell Chem Biol 30: 403-411.e4

  • DOI: https://doi.org/10.1016/j.chembiol.2023.03.005
  • Primary Citation of Related Structures:  
    8DMH, 8DMI

  • PubMed Abstract: 

    The mammarenavirus lymphocytic choriomeningitis virus (LCMV) is a globally distributed zoonotic pathogen that can be lethal in immunocompromised patients and can cause severe birth defects if acquired during pregnancy. The structure of the trimeric surface glycoprotein, essential for entry, vaccine design, and antibody neutralization, remains unknown. Here, we present the cryoelectron microscopy (cryo-EM) structure of the LCMV surface glycoprotein (GP) in its trimeric pre-fusion assembly both alone and in complex with a rationally engineered monoclonal neutralizing antibody termed 18.5C-M28 (M28). Additionally, we show that passive administration of M28, either as a prophylactic or therapeutic, protects mice from LCMV clone 13 (LCMV cl13 ) challenge. Our study illuminates not only the overall structural organization of LCMV GP and the mechanism for its inhibition by M28 but also presents a promising therapeutic candidate to prevent severe or fatal disease in individuals who are at risk of infection by a virus that poses a threat worldwide.


  • Organizational Affiliation

    La Jolla Institute for Immunology; La Jolla, CA 92037, USA; Program in Virology, Harvard Medical School, Boston, MA 02115, USA; Department of Molecular Microbiology, Washington University in St. Louis, St. Louis, MI 63110, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Glycoprotein G1A,
C [auth B],
E [auth C]
225Mammarenavirus choriomeningitidisMutation(s): 3 
Gene Names: GPCGP-CSegment S
UniProt
Find proteins for P09991 (Lymphocytic choriomeningitis virus (strain Armstrong))
Explore P09991 
Go to UniProtKB:  P09991
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP09991
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Glycoprotein G2,Cobalamin adenosyltransferase-like domain-containing protein trimerization tagB [auth a],
D [auth b],
F [auth c]
375Mammarenavirus choriomeningitidisMutation(s): 4 
Gene Names: GPCGP-CSegment STa1434
UniProt
Find proteins for Q9HIA7 (Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165))
Explore Q9HIA7 
Go to UniProtKB:  Q9HIA7
Find proteins for P09991 (Lymphocytic choriomeningitis virus (strain Armstrong))
Explore P09991 
Go to UniProtKB:  P09991
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsP09991Q9HIA7
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.26 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.21rc1_4916

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesU19 AI 142790
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR01 A1132244
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR01AI14125
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR21AI137809
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesF31-AI154700
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesT32-AI125179
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesP01 AI145815
Swiss National Science FoundationSwitzerlandP2EZP3_195680
Swiss National Science FoundationSwitzerlandP500PB_210992

Revision History  (Full details and data files)

  • Version 1.0: 2023-04-12
    Type: Initial release
  • Version 1.1: 2023-05-03
    Changes: Database references