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 8CW9 | pdb_00008cw9

Prefusion-stabilized hMPV fusion protein bound to ADI-61026 and MPE8 Fabs


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.46 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history. 

Literature

Potently neutralizing and protective anti-human metapneumovirus antibodies target diverse sites on the fusion glycoprotein.

Rappazzo, C.G., Hsieh, C.L., Rush, S.A., Esterman, E.S., Delgado, T., Geoghegan, J.C., Wec, A.Z., Sakharkar, M., Mas, V., McLellan, J.S., Walker, L.M.

(2022) Immunity 55: 1710-1724.e8

  • DOI: https://doi.org/10.1016/j.immuni.2022.07.003
  • Primary Citation Related Structures: 
    8CW9

  • PubMed Abstract: 

    Human metapneumovirus (hMPV) is a leading cause of acute lower respiratory tract infections in high-risk populations, yet there are no vaccines or anti-viral therapies approved for the prevention or treatment of hMPV-associated disease. Here, we used a high-throughput single-cell technology to interrogate memory B cell responses to the hMPV fusion (F) glycoprotein in young adult and elderly donors. Across all donors, the neutralizing antibody response was primarily directed to epitopes expressed on both pre- and post-fusion F conformations. However, we identified rare, highly potent broadly neutralizing antibodies that recognize pre-fusion-specific epitopes and structurally characterized an antibody that targets a site of vulnerability at the pre-fusion F trimer apex. Additionally, monotherapy with neutralizing antibodies targeting three distinct antigenic sites provided robust protection against lower respiratory tract infection in a small animal model. This study provides promising monoclonal antibody candidates for passive immunoprophylaxis and informs the rational design of hMPV vaccine immunogens.


  • Organizational Affiliation: 
    • Adimab, LLC, Lebanon, NH 03766, USA.

Macromolecule Content 

  • Total Structure Weight: 541.48 kDa 
  • Atom Count: 20,229 
  • Modeled Residue Count: 2,658 
  • Deposited Residue Count: 4,989 
  • Unique protein chains: 5

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Fusion glycoprotein F0
A, E, F
551human metapneumovirusMutation(s): 14 
UniProt
Find proteins for H6X1Z0 (human metapneumovirus)
Explore H6X1Z0 
Go to UniProtKB:  H6X1Z0
Entity Groups
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UniProt GroupH6X1Z0
Glycosylation
Glycosylation Sites: 1
Sequence Annotations
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
MPE8 light chain
B, M, O
216Homo sapiensMutation(s): 0 
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
ADI-61026 heavy
C, H, I
228Homo sapiensMutation(s): 0 
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
ADI-61026 light
D, K, L
214Homo sapiensMutation(s): 0 
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
MPE8 heavy chain
G, J, N
454Homo sapiensMutation(s): 0 
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.46 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Robert A. Welch FoundationUnited StatesF-0003-19620604

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-10
    Type: Initial release
  • Version 1.1: 2023-02-22
    Changes: Database references
  • Version 1.2: 2024-10-30
    Changes: Data collection, Structure summary
  • Version 1.3: 2025-05-28
    Changes: Data collection