8CKB | pdb_00008ckb

Asymmetric reconstruction of the crAss001 virion

• PDB DOI: https://doi.org/10.2210/pdb8CKB/pdb
• EM Map EMD-14100: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): Bacteroides phage crAss001
• Mutation(s): No 


• Deposited: 2023-02-16 Released: 2023-11-22 
• Deposition Author(s): Bayfield, O.W., Shkoporov, A.N., Yutin, N., Khokhlova, E.V., Smith, J.L.R., Hawkins, D.E.D.P., Koonin, E.V., Hill, C., Antson, A.A.
• Funding Organization(s): Wellcome Trust

---

Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 4.39 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural atlas of the most abundant human gut virus

Bayfield, O.W., Shkoporov, A.N., Yutin, N., Khokhlova, E.V., Smith, J.L.R., Hawkins, D.E.D.P., Koonin, E.V., Hill, C., Antson, A.A.

(null) Nature 

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 1445-mer - A535B530C110D75E36F24G24H12I12J12K12L12M12N12O10P6Q6R2S2T1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 1445-mer - A535B530C110D75E36F36G24H12I12J12K12L12M12N10O6P2Q1R1S1T1U1V1W1X1Y1 

Local Symmetry: Cyclic - C5  (Explore in 3D)
Local Stoichiometry: Homo 535-mer - A535 Local Symmetry: Cyclic - C5  (Explore in 3D)
Local Stoichiometry: Homo 530-mer - B530 Local Symmetry: Cyclic - C5  (Explore in 3D)
Local Stoichiometry: Homo 110-mer - C110 Local Symmetry: Cyclic - C5  (Explore in 3D)
Local Stoichiometry: Homo 75-mer - D75 Local Symmetry: Cyclic - C12  (Explore in 3D)
Local Stoichiometry: Homo 36-mer - E36 Local Symmetry: Cyclic - C5  (Explore in 3D)
Local Stoichiometry: Homo 10-mer - O10 Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 2-mer - R2 Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 2-mer - S2 Local Symmetry: Cyclic - C6  (Explore in 3D)
Local Stoichiometry: Hetero 12-mer - P6Q6 Local Symmetry: Cyclic - C12  (Explore in 3D)
Local Stoichiometry: Hetero 48-mer - F24G24 Local Symmetry: Cyclic - C12  (Explore in 3D)
Local Stoichiometry: Hetero 84-mer - H12I12J12K12L12M12N12 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: mass spectrometry

Macromolecule Content 

• Total Structure Weight: 62,112.09 kDa 
• Atom Count: 3,871,365 
• Modeled Residue Count: 492,346 
• Deposited Residue Count: 557,895 
• Unique protein chains: 17

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Auxiliary capsid protein gp36	A [auth A001], AA [auth A027], AB [auth A053], AC [auth A079], AD [auth A105], AE [auth A131], AF [auth A157], AG [auth A183], AH [auth A209], AI [auth A235], AJ [auth A261], AK [auth A287], AL [auth A313], AM [auth A339], AN [auth A365], AO [auth A391], AP [auth A417], AQ [auth A443], AR [auth A469], AS [auth A495], AT [auth A521], B [auth A002], BA [auth A028], BB [auth A054], BC [auth A080], BD [auth A106], BE [auth A132], BF [auth A158], BG [auth A184], BH [auth A210], BI [auth A236], BJ [auth A262], BK [auth A288], BL [auth A314], BM [auth A340], BN [auth A366], BO [auth A392], BP [auth A418], BQ [auth A444], BR [auth A470], BS [auth A496], BT [auth A522], C [auth A003], CA [auth A029], CB [auth A055], CC [auth A081], CD [auth A107], CE [auth A133], CF [auth A159], CG [auth A185], CH [auth A211], CI [auth A237], CJ [auth A263], CK [auth A289], CL [auth A315], CM [auth A341], CN [auth A367], CO [auth A393], CP [auth A419], CQ [auth A445], CR [auth A471], CS [auth A497], CT [auth A523], D [auth A004], DA [auth A030], DB [auth A056], DC [auth A082], DD [auth A108], DE [auth A134], DF [auth A160], DG [auth A186], DH [auth A212], DI [auth A238], DJ [auth A264], DK [auth A290], DL [auth A316], DM [auth A342], DN [auth A368], DO [auth A394], DP [auth A420], DQ [auth A446], DR [auth A472], DS [auth A498], DT [auth A524], E [auth A005], EA [auth A031], EB [auth A057], EC [auth A083], ED [auth A109], EE [auth A135], EF [auth A161], EG [auth A187], EH [auth A213], EI [auth A239], EJ [auth A265], EK [auth A291], EL [auth A317], EM [auth A343], EN [auth A369], EO [auth A395], EP [auth A421], EQ [auth A447], ER [auth A473], ES [auth A499], ET [auth A525], F [auth A006], FA [auth A032], FB [auth A058], FC [auth A084], FD [auth A110], FE [auth A136], FF [auth A162], FG [auth A188], FH [auth A214], FI [auth A240], FJ [auth A266], FK [auth A292], FL [auth A318], FM [auth A344], FN [auth A370], FO [auth A396], FP [auth A422], FQ [auth A448], FR [auth A474], FS [auth A500], FT [auth A526], G [auth A007], GA [auth A033], GB [auth A059], GC [auth A085], GD [auth A111], GE [auth A137], GF [auth A163], GG [auth A189], GH [auth A215], GI [auth A241], GJ [auth A267], GK [auth A293], GL [auth A319], GM [auth A345], GN [auth A371], GO [auth A397], GP [auth A423], GQ [auth A449], GR [auth A475], GS [auth A501], GT [auth A527], H [auth A008], HA [auth A034], HB [auth A060], HC [auth A086], HD [auth A112], HE [auth A138], HF [auth A164], HG [auth A190], HH [auth A216], HI [auth A242], HJ [auth A268], HK [auth A294], HL [auth A320], HM [auth A346], HN [auth A372], HO [auth A398], HP [auth A424], HQ [auth A450], HR [auth A476], HS [auth A502], HT [auth A528], I [auth A009], IA [auth A035], IB [auth A061], IC [auth A087], ID [auth A113], IE [auth A139], IF [auth A165], IG [auth A191], IH [auth A217], II [auth A243], IJ [auth A269], IK [auth A295], IL [auth A321], IM [auth A347], IN [auth A373], IO [auth A399], IP [auth A425], IQ [auth A451], IR [auth A477], IS [auth A503], IT [auth A529], J [auth A010], JA [auth A036], JB [auth A062], JC [auth A088], JD [auth A114], JE [auth A140], JF [auth A166], JG [auth A192], JH [auth A218], JI [auth A244], JJ [auth A270], JK [auth A296], JL [auth A322], JM [auth A348], JN [auth A374], JO [auth A400], JP [auth A426], JQ [auth A452], JR [auth A478], JS [auth A504], JT [auth A530], K [auth A011], KA [auth A037], KB [auth A063], KC [auth A089], KD [auth A115], KE [auth A141], KF [auth A167], KG [auth A193], KH [auth A219], KI [auth A245], KJ [auth A271], KK [auth A297], KL [auth A323], KM [auth A349], KN [auth A375], KO [auth A401], KP [auth A427], KQ [auth A453], KR [auth A479], KS [auth A505], KT [auth A531], L [auth A012], LA [auth A038], LB [auth A064], LC [auth A090], LD [auth A116], LE [auth A142], LF [auth A168], LG [auth A194], LH [auth A220], LI [auth A246], LJ [auth A272], LK [auth A298], LL [auth A324], LM [auth A350], LN [auth A376], LO [auth A402], LP [auth A428], LQ [auth A454], LR [auth A480], LS [auth A506], LT [auth A532], M [auth A013], MA [auth A039], MB [auth A065], MC [auth A091], MD [auth A117], ME [auth A143], MF [auth A169], MG [auth A195], MH [auth A221], MI [auth A247], MJ [auth A273], MK [auth A299], ML [auth A325], MM [auth A351], MN [auth A377], MO [auth A403], MP [auth A429], MQ [auth A455], MR [auth A481], MS [auth A507], MT [auth A533], N [auth A014], NA [auth A040], NB [auth A066], NC [auth A092], ND [auth A118], NE [auth A144], NF [auth A170], NG [auth A196], NH [auth A222], NI [auth A248], NJ [auth A274], NK [auth A300], NL [auth A326], NM [auth A352], NN [auth A378], NO [auth A404], NP [auth A430], NQ [auth A456], NR [auth A482], NS [auth A508], NT [auth A534], O [auth A015], OA [auth A041], OB [auth A067], OC [auth A093], OD [auth A119], OE [auth A145], OF [auth A171], OG [auth A197], OH [auth A223], OI [auth A249], OJ [auth A275], OK [auth A301], OL [auth A327], OM [auth A353], ON [auth A379], OO [auth A405], OP [auth A431], OQ [auth A457], OR [auth A483], OS [auth A509], OT [auth A535], P [auth A016], PA [auth A042], PB [auth A068], PC [auth A094], PD [auth A120], PE [auth A146], PF [auth A172], PG [auth A198], PH [auth A224], PI [auth A250], PJ [auth A276], PK [auth A302], PL [auth A328], PM [auth A354], PN [auth A380], PO [auth A406], PP [auth A432], PQ [auth A458], PR [auth A484], PS [auth A510], Q [auth A017], QA [auth A043], QB [auth A069], QC [auth A095], QD [auth A121], QE [auth A147], QF [auth A173], QG [auth A199], QH [auth A225], QI [auth A251], QJ [auth A277], QK [auth A303], QL [auth A329], QM [auth A355], QN [auth A381], QO [auth A407], QP [auth A433], QQ [auth A459], QR [auth A485], R [auth A018], RA [auth A044], RB [auth A070], RC [auth A096], RD [auth A122], RE [auth A148], RF [auth A174], RG [auth A200], RH [auth A226], RI [auth A252], RJ [auth A278], RK [auth A304], RL [auth A330], RM [auth A356], RN [auth A382], RO [auth A408], RP [auth A434], RQ [auth A460], RR [auth A486], RS [auth A512], S [auth A019], SA [auth A045], SB [auth A071], SC [auth A097], SD [auth A123], SE [auth A149], SF [auth A175], SG [auth A201], SH [auth A227], SI [auth A253], SJ [auth A279], SK [auth A305], SL [auth A331], SM [auth A357], SN [auth A383], SO [auth A409], SP [auth A435], SQ [auth A461], SR [auth A487], SS [auth A513], T [auth A020], TA [auth A046], TB [auth A072], TC [auth A098], TD [auth A124], TE [auth A150], TF [auth A176], TG [auth A202], TH [auth A228], TI [auth A254], TJ [auth A280], TK [auth A306], TL [auth A332], TM [auth A358], TN [auth A384], TO [auth A410], TP [auth A436], TQ [auth A462], TR [auth A488], TS [auth A514], U [auth A021], UA [auth A047], UB [auth A073], UC [auth A099], UD [auth A125], UE [auth A151], UF [auth A177], UG [auth A203], UH [auth A229], UI [auth A255], UJ [auth A281], UK [auth A307], UL [auth A333], UM [auth A359], UN [auth A385], UO [auth A411], UP [auth A437], UQ [auth A463], UR [auth A489], US [auth A515], V [auth A022], VA [auth A048], VB [auth A074], VC [auth A100], VD [auth A126], VE [auth A152], VF [auth A178], VG [auth A204], VH [auth A230], VI [auth A256], VJ [auth A282], VK [auth A308], VL [auth A334], VM [auth A360], VN [auth A386], VO [auth A412], VP [auth A438], VQ [auth A464], VR [auth A490], VS [auth A516], W [auth A023], WA [auth A049], WB [auth A075], WC [auth A101], WD [auth A127], WE [auth A153], WF [auth A179], WG [auth A205], WH [auth A231], WI [auth A257], WJ [auth A283], WK [auth A309], WL [auth A335], WM [auth A361], WN [auth A387], WO [auth A413], WP [auth A439], WQ [auth A465], WR [auth A491], WS [auth A517], X [auth A024], XA [auth A050], XB [auth A076], XC [auth A102], XD [auth A128], XE [auth A154], XF [auth A180], XG [auth A206], XH [auth A232], XI [auth A258], XJ [auth A284], XK [auth A310], XL [auth A336], XM [auth A362], XN [auth A388], XO [auth A414], XP [auth A440], XQ [auth A466], XR [auth A492], XS [auth A518], Y [auth A025], YA [auth A051], YB [auth A077], YC [auth A103], YD [auth A129], YE [auth A155], YF [auth A181], YG [auth A207], YH [auth A233], YI [auth A259], YJ [auth A285], YK [auth A311], YL [auth A337], YM [auth A363], YN [auth A389], YO [auth A415], YP [auth A441], YQ [auth A467], YR [auth A493], YS [auth A519], Z [auth A026], ZA [auth A052], ZB [auth A078], ZC [auth A104], ZD [auth A130], ZE [auth A156], ZF [auth A182], ZG [auth A208], ZH [auth A234], ZI [auth A260], ZJ [auth A286], ZK [auth A312], ZL [auth A338], ZM [auth A364], ZN [auth A390], ZO [auth A416], ZP [auth A442], ZQ [auth A468], ZR [auth A494], ZS [auth A520]	333	Bacteroides phage crAss001	Mutation(s): 0
UniProt
Find proteins for A0A385DVS7 (Bacteroides phage crAss001) Explore A0A385DVS7  Go to UniProtKB:  A0A385DVS7

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Head fiber dimer protein gp29	QS [auth A511]	24	Bacteroides phage crAss001	Mutation(s): 0
UniProt
Find proteins for A0A385DVL5 (Bacteroides phage crAss001) Explore A0A385DVL5  Go to UniProtKB:  A0A385DVL5

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Head fiber dimer protein gp29	AU [auth B012], AV [auth B038], AW [auth B064], AX [auth B090], BU [auth B013], BV [auth B039], BW [auth B065], BX [auth B091], CU [auth B014], CV [auth B040], CW [auth B066], CX [auth B092], DU [auth B015], DV [auth B041], DW [auth B067], DX [auth B093], EU [auth B016], EV [auth B042], EW [auth B068], EX [auth B094], FU [auth B017], FV [auth B043], FW [auth B069], FX [auth B095], GU [auth B018], GV [auth B044], GW [auth B070], GX [auth B096], HU [auth B019], HV [auth B045], HW [auth B071], HX [auth B097], IU [auth B020], IV [auth B046], IW [auth B072], IX [auth B098], JU [auth B021], JV [auth B047], JW [auth B073], JX [auth B099], KU [auth B022], KV [auth B048], KW [auth B074], KX [auth B100], LU [auth B023], LV [auth B049], LW [auth B075], LX [auth B101], MU [auth B024], MV [auth B050], MW [auth B076], MX [auth B102], NU [auth B025], NV [auth B051], NW [auth B077], NX [auth B103], OU [auth B026], OV [auth B052], OW [auth B078], OX [auth B104], PT [auth B001], PU [auth B027], PV [auth B053], PW [auth B079], PX [auth B105], QT [auth B002], QU [auth B028], QV [auth B054], QW [auth B080], QX [auth B106], RT [auth B003], RU [auth B029], RV [auth B055], RW [auth B081], RX [auth B107], ST [auth B004], SU [auth B030], SV [auth B056], SW [auth B082], SX [auth B108], TT [auth B005], TU [auth B031], TV [auth B057], TW [auth B083], TX [auth B109], UT [auth B006], UU [auth B032], UV [auth B058], UW [auth B084], UX [auth B110], VT [auth B007], VU [auth B033], VV [auth B059], VW [auth B085], WT [auth B008], WU [auth B034], WV [auth B060], WW [auth B086], XT [auth B009], XU [auth B035], XV [auth B061], XW [auth B087], YT [auth B010], YU [auth B036], YV [auth B062], YW [auth B088], ZT [auth B011], ZU [auth B037], ZV [auth B063], ZW [auth B089]	122	Bacteroides phage crAss001	Mutation(s): 0
UniProt
Find proteins for A0A385DTC5 (Bacteroides phage crAss001) Explore A0A385DTC5  Go to UniProtKB:  A0A385DTC5

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Head fiber trimer protein gp21	AAA [auth C058], AY [auth C006], AZ [auth C032], BAA [auth C059], BY [auth C007], BZ [auth C033], CAA [auth C060], CY [auth C008], CZ [auth C034], DAA [auth C061], DY [auth C009], DZ [auth C035], EAA [auth C062], EY [auth C010], EZ [auth C036], FAA [auth C063], FY [auth C011], FZ [auth C037], GAA [auth C064], GY [auth C012], GZ [auth C038], HAA [auth C065], HY [auth C013], HZ [auth C039], IAA [auth C066], IY [auth C014], IZ [auth C040], JAA [auth C067], JY [auth C015], JZ [auth C041], KAA [auth C068], KY [auth C016], KZ [auth C042], LAA [auth C069], LY [auth C017], LZ [auth C043], MAA [auth C070], MY [auth C018], MZ [auth C044], NAA [auth C071], NY [auth C019], NZ [auth C045], OAA [auth C072], OY [auth C020], OZ [auth C046], PAA [auth C073], PY [auth C021], PZ [auth C047], QAA [auth C074], QY [auth C022], QZ [auth C048], RAA [auth C075], RY [auth C023], RZ [auth C049], SY [auth C024], SZ [auth C050], TY [auth C025], TZ [auth C051], UY [auth C026], UZ [auth C052], VX [auth C001], VY [auth C027], VZ [auth C053], WX [auth C002], WY [auth C028], WZ [auth C054], XX [auth C003], XY [auth C029], XZ [auth C055], YX [auth C004], YY [auth C030], YZ [auth C056], ZX [auth C005], ZY [auth C031], ZZ [auth C057]	97	Bacteroides phage crAss001	Mutation(s): 0

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Muzzle bound helix	SAA [auth D001], TAA [auth D002], UAA [auth D003], VAA [auth D004], WAA [auth D005], XAA [auth D006]	14	Bacteroides phage crAss001	Mutation(s): 0

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Major capsid protein gp32	ABA [auth E003], ACA [auth E029], ADA [auth E055], AEA [auth E081], AFA [auth E107], AGA [auth E133], AHA [auth E159], AIA [auth E185], AJA [auth E211], AKA [auth E237], ALA [auth E263], AMA [auth E289], ANA [auth E315], AOA [auth E341], APA [auth E367], AQA [auth E393], ARA [auth E419], ASA [auth E445], ATA [auth E471], AUA [auth E497], AVA [auth E523], BBA [auth E004], BCA [auth E030], BDA [auth E056], BEA [auth E082], BFA [auth E108], BGA [auth E134], BHA [auth E160], BIA [auth E186], BJA [auth E212], BKA [auth E238], BLA [auth E264], BMA [auth E290], BNA [auth E316], BOA [auth E342], BPA [auth E368], BQA [auth E394], BRA [auth E420], BSA [auth E446], BTA [auth E472], BUA [auth E498], BVA [auth E524], CBA [auth E005], CCA [auth E031], CDA [auth E057], CEA [auth E083], CFA [auth E109], CGA [auth E135], CHA [auth E161], CIA [auth E187], CJA [auth E213], CKA [auth E239], CLA [auth E265], CMA [auth E291], CNA [auth E317], COA [auth E343], CPA [auth E369], CQA [auth E395], CRA [auth E421], CSA [auth E447], CTA [auth E473], CUA [auth E499], CVA [auth E525], DBA [auth E006], DCA [auth E032], DDA [auth E058], DEA [auth E084], DFA [auth E110], DGA [auth E136], DHA [auth E162], DIA [auth E188], DJA [auth E214], DKA [auth E240], DLA [auth E266], DMA [auth E292], DNA [auth E318], DOA [auth E344], DPA [auth E370], DQA [auth E396], DRA [auth E422], DSA [auth E448], DTA [auth E474], DUA [auth E500], DVA [auth E526], EBA [auth E007], ECA [auth E033], EDA [auth E059], EEA [auth E085], EFA [auth E111], EGA [auth E137], EHA [auth E163], EIA [auth E189], EJA [auth E215], EKA [auth E241], ELA [auth E267], EMA [auth E293], ENA [auth E319], EOA [auth E345], EPA [auth E371], EQA [auth E397], ERA [auth E423], ESA [auth E449], ETA [auth E475], EUA [auth E501], EVA [auth E527], FBA [auth E008], FCA [auth E034], FDA [auth E060], FEA [auth E086], FFA [auth E112], FGA [auth E138], FHA [auth E164], FIA [auth E190], FJA [auth E216], FKA [auth E242], FLA [auth E268], FMA [auth E294], FNA [auth E320], FOA [auth E346], FPA [auth E372], FQA [auth E398], FRA [auth E424], FSA [auth E450], FTA [auth E476], FUA [auth E502], FVA [auth E528], GBA [auth E009], GCA [auth E035], GDA [auth E061], GEA [auth E087], GFA [auth E113], GGA [auth E139], GHA [auth E165], GIA [auth E191], GJA [auth E217], GKA [auth E243], GLA [auth E269], GMA [auth E295], GNA [auth E321], GOA [auth E347], GPA [auth E373], GQA [auth E399], GRA [auth E425], GSA [auth E451], GTA [auth E477], GUA [auth E503], GVA [auth E529], HBA [auth E010], HCA [auth E036], HDA [auth E062], HEA [auth E088], HFA [auth E114], HGA [auth E140], HHA [auth E166], HIA [auth E192], HJA [auth E218], HKA [auth E244], HLA [auth E270], HMA [auth E296], HNA [auth E322], HOA [auth E348], HPA [auth E374], HQA [auth E400], HRA [auth E426], HSA [auth E452], HTA [auth E478], HUA [auth E504], HVA [auth E530], IBA [auth E011], ICA [auth E037], IDA [auth E063], IEA [auth E089], IFA [auth E115], IGA [auth E141], IHA [auth E167], IIA [auth E193], IJA [auth E219], IKA [auth E245], ILA [auth E271], IMA [auth E297], INA [auth E323], IOA [auth E349], IPA [auth E375], IQA [auth E401], IRA [auth E427], ISA [auth E453], ITA [auth E479], IUA [auth E505], IVA [auth E531], JBA [auth E012], JCA [auth E038], JDA [auth E064], JEA [auth E090], JFA [auth E116], JGA [auth E142], JHA [auth E168], JIA [auth E194], JJA [auth E220], JKA [auth E246], JLA [auth E272], JMA [auth E298], JNA [auth E324], JOA [auth E350], JPA [auth E376], JQA [auth E402], JRA [auth E428], JSA [auth E454], JTA [auth E480], JUA [auth E506], JVA [auth E532], KBA [auth E013], KCA [auth E039], KDA [auth E065], KEA [auth E091], KFA [auth E117], KGA [auth E143], KHA [auth E169], KIA [auth E195], KJA [auth E221], KKA [auth E247], KLA [auth E273], KMA [auth E299], KNA [auth E325], KOA [auth E351], KPA [auth E377], KQA [auth E403], KRA [auth E429], KSA [auth E455], KTA [auth E481], KUA [auth E507], KVA [auth E533], LBA [auth E014], LCA [auth E040], LDA [auth E066], LEA [auth E092], LFA [auth E118], LGA [auth E144], LHA [auth E170], LIA [auth E196], LJA [auth E222], LKA [auth E248], LLA [auth E274], LMA [auth E300], LNA [auth E326], LOA [auth E352], LPA [auth E378], LQA [auth E404], LRA [auth E430], LSA [auth E456], LTA [auth E482], LUA [auth E508], LVA [auth E534], MBA [auth E015], MCA [auth E041], MDA [auth E067], MEA [auth E093], MFA [auth E119], MGA [auth E145], MHA [auth E171], MIA [auth E197], MJA [auth E223], MKA [auth E249], MLA [auth E275], MMA [auth E301], MNA [auth E327], MOA [auth E353], MPA [auth E379], MQA [auth E405], MRA [auth E431], MSA [auth E457], MTA [auth E483], MUA [auth E509], MVA [auth E535], NBA [auth E016], NCA [auth E042], NDA [auth E068], NEA [auth E094], NFA [auth E120], NGA [auth E146], NHA [auth E172], NIA [auth E198], NJA [auth E224], NKA [auth E250], NLA [auth E276], NMA [auth E302], NNA [auth E328], NOA [auth E354], NPA [auth E380], NQA [auth E406], NRA [auth E432], NSA [auth E458], NTA [auth E484], NUA [auth E510], OBA [auth E017], OCA [auth E043], ODA [auth E069], OEA [auth E095], OFA [auth E121], OGA [auth E147], OHA [auth E173], OIA [auth E199], OJA [auth E225], OKA [auth E251], OLA [auth E277], OMA [auth E303], ONA [auth E329], OOA [auth E355], OPA [auth E381], OQA [auth E407], ORA [auth E433], OSA [auth E459], OTA [auth E485], OUA [auth E511], PBA [auth E018], PCA [auth E044], PDA [auth E070], PEA [auth E096], PFA [auth E122], PGA [auth E148], PHA [auth E174], PIA [auth E200], PJA [auth E226], PKA [auth E252], PLA [auth E278], PMA [auth E304], PNA [auth E330], POA [auth E356], PPA [auth E382], PQA [auth E408], PRA [auth E434], PSA [auth E460], PTA [auth E486], PUA [auth E512], QBA [auth E019], QCA [auth E045], QDA [auth E071], QEA [auth E097], QFA [auth E123], QGA [auth E149], QHA [auth E175], QIA [auth E201], QJA [auth E227], QKA [auth E253], QLA [auth E279], QMA [auth E305], QNA [auth E331], QOA [auth E357], QPA [auth E383], QQA [auth E409], QRA [auth E435], QSA [auth E461], QTA [auth E487], QUA [auth E513], RBA [auth E020], RCA [auth E046], RDA [auth E072], REA [auth E098], RFA [auth E124], RGA [auth E150], RHA [auth E176], RIA [auth E202], RJA [auth E228], RKA [auth E254], RLA [auth E280], RMA [auth E306], RNA [auth E332], ROA [auth E358], RPA [auth E384], RQA [auth E410], RRA [auth E436], RSA [auth E462], RTA [auth E488], RUA [auth E514], SBA [auth E021], SCA [auth E047], SDA [auth E073], SEA [auth E099], SFA [auth E125], SGA [auth E151], SHA [auth E177], SIA [auth E203], SJA [auth E229], SKA [auth E255], SLA [auth E281], SMA [auth E307], SNA [auth E333], SOA [auth E359], SPA [auth E385], SQA [auth E411], SRA [auth E437], SSA [auth E463], STA [auth E489], SUA [auth E515], TBA [auth E022], TCA [auth E048], TDA [auth E074], TEA [auth E100], TFA [auth E126], TGA [auth E152], THA [auth E178], TIA [auth E204], TJA [auth E230], TKA [auth E256], TLA [auth E282], TMA [auth E308], TNA [auth E334], TOA [auth E360], TPA [auth E386], TQA [auth E412], TRA [auth E438], TSA [auth E464], TTA [auth E490], TUA [auth E516], UBA [auth E023], UCA [auth E049], UDA [auth E075], UEA [auth E101], UFA [auth E127], UGA [auth E153], UHA [auth E179], UIA [auth E205], UJA [auth E231], UKA [auth E257], ULA [auth E283], UMA [auth E309], UNA [auth E335], UOA [auth E361], UPA [auth E387], UQA [auth E413], URA [auth E439], USA [auth E465], UTA [auth E491], UUA [auth E517], VBA [auth E024], VCA [auth E050], VDA [auth E076], VEA [auth E102], VFA [auth E128], VGA [auth E154], VHA [auth E180], VIA [auth E206], VJA [auth E232], VKA [auth E258], VLA [auth E284], VMA [auth E310], VNA [auth E336], VOA [auth E362], VPA [auth E388], VQA [auth E414], VRA [auth E440], VSA [auth E466], VTA [auth E492], VUA [auth E518], WBA [auth E025], WCA [auth E051], WDA [auth E077], WEA [auth E103], WFA [auth E129], WGA [auth E155], WHA [auth E181], WIA [auth E207], WJA [auth E233], WKA [auth E259], WLA [auth E285], WMA [auth E311], WNA [auth E337], WOA [auth E363], WPA [auth E389], WQA [auth E415], WRA [auth E441], WSA [auth E467], WTA [auth E493], WUA [auth E519], XBA [auth E026], XCA [auth E052], XDA [auth E078], XEA [auth E104], XFA [auth E130], XGA [auth E156], XHA [auth E182], XIA [auth E208], XJA [auth E234], XKA [auth E260], XLA [auth E286], XMA [auth E312], XNA [auth E338], XOA [auth E364], XPA [auth E390], XQA [auth E416], XRA [auth E442], XSA [auth E468], XTA [auth E494], XUA [auth E520], YAA [auth E001], YBA [auth E027], YCA [auth E053], YDA [auth E079], YEA [auth E105], YFA [auth E131], YGA [auth E157], YHA [auth E183], YIA [auth E209], YJA [auth E235], YKA [auth E261], YLA [auth E287], YMA [auth E313], YNA [auth E339], YOA [auth E365], YPA [auth E391], YQA [auth E417], YRA [auth E443], YSA [auth E469], YTA [auth E495], YUA [auth E521], ZAA [auth E002], ZBA [auth E028], ZCA [auth E054], ZDA [auth E080], ZEA [auth E106], ZFA [auth E132], ZGA [auth E158], ZHA [auth E184], ZIA [auth E210], ZJA [auth E236], ZKA [auth E262], ZLA [auth E288], ZMA [auth E314], ZNA [auth E340], ZOA [auth E366], ZPA [auth E392], ZQA [auth E418], ZRA [auth E444], ZSA [auth E470], ZTA [auth E496], ZUA [auth E522]	504	Bacteroides phage crAss001	Mutation(s): 0
UniProt
Find proteins for A0A385DVU6 (Bacteroides phage crAss001) Explore A0A385DVU6  Go to UniProtKB:  A0A385DVU6

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
Muzzle protein gp44	NVA [auth F001], OVA [auth F002], PVA [auth F003], QVA [auth F004], RVA [auth F005], SVA [auth F006]	1,371	Bacteroides phage crAss001	Mutation(s): 0
UniProt
Find proteins for A0A385DVD6 (Bacteroides phage crAss001) Explore A0A385DVD6  Go to UniProtKB:  A0A385DVD6

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
Cargo protein 1 gp45	AWA [auth G008], BWA [auth G009], CWA [auth G010], DWA [auth G011], EWA [auth G012], FWA [auth G013], GWA [auth G014], HWA [auth G015], IWA [auth G016], JWA [auth G017], KWA [auth G018], LWA [auth G019], MWA [auth G020], NWA [auth G021], OWA [auth G022], PWA [auth G023], QWA [auth G024], TVA [auth G001], UVA [auth G002], VVA [auth G003], WVA [auth G004], XVA [auth G005], YVA [auth G006], ZVA [auth G007]	842	Bacteroides phage crAss001	Mutation(s): 0
UniProt
Find proteins for A0A385DV85 (Bacteroides phage crAss001) Explore A0A385DV85  Go to UniProtKB:  A0A385DV85

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
Portal protein gp20	AXA [auth H010], BXA [auth H011], CXA [auth H012], RWA [auth H001], SWA [auth H002], TWA [auth H003], UWA [auth H004], VWA [auth H005], WWA [auth H006], XWA [auth H007], YWA [auth H008], ZWA [auth H009]	806	Bacteroides phage crAss001	Mutation(s): 0
UniProt
Find proteins for A0A385DT68 (Bacteroides phage crAss001) Explore A0A385DT68  Go to UniProtKB:  A0A385DT68

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Portal vertex capsid protein gp57	DXA [auth I001], EXA [auth I002], FXA [auth I003], GXA [auth I004], HXA [auth I005], IXA [auth I006], JXA [auth I007], KXA [auth I008], LXA [auth I009], MXA [auth I010]	104	Bacteroides phage crAss001	Mutation(s): 0
UniProt
Find proteins for A0A385DTA3 (Bacteroides phage crAss001) Explore A0A385DTA3  Go to UniProtKB:  A0A385DTA3

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
Ring protein 1 gp43	NXA [auth J001], OXA [auth J002], PXA [auth J003], QXA [auth J004], RXA [auth J005], SXA [auth J006], TXA [auth J007], UXA [auth J008], VXA [auth J009], WXA [auth J010], XXA [auth J011], YXA [auth J012]	236	Bacteroides phage crAss001	Mutation(s): 0
UniProt
Find proteins for A0A385DT91 (Bacteroides phage crAss001) Explore A0A385DT91  Go to UniProtKB:  A0A385DT91

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
Ring protein 2 gp40	AYA [auth K002], BYA [auth K003], CYA [auth K004], DYA [auth K005], EYA [auth K006], FYA [auth K007], GYA [auth K008], HYA [auth K009], IYA [auth K010], JYA [auth K011], KYA [auth K012], ZXA [auth K001]	225	Bacteroides phage crAss001	Mutation(s): 0
UniProt
Find proteins for A0A385DT87 (Bacteroides phage crAss001) Explore A0A385DT87  Go to UniProtKB:  A0A385DT87

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
Ring protein 3 gp35	LYA [auth L001], MYA [auth L002], NYA [auth L003], OYA [auth L004], PYA [auth L005], QYA [auth L006], RYA [auth L007], SYA [auth L008], TYA [auth L009], UYA [auth L010], VYA [auth L011], WYA [auth L012]	230	Bacteroides phage crAss001	Mutation(s): 0
UniProt
Find proteins for A0A385DV73 (Bacteroides phage crAss001) Explore A0A385DV73  Go to UniProtKB:  A0A385DV73

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
Ring protein 4/5 gp34	AZA [auth M004], BZA [auth M005], CZA [auth M006], DZA [auth M007], EZA [auth M008], FZA [auth M009], GZA [auth M010], HZA [auth M011], IZA [auth M012], JZA [auth M013], KZA [auth M014], LZA [auth M015], MZA [auth M016], NZA [auth M017], OZA [auth M018], PZA [auth M019], QZA [auth M020], RZA [auth M021], SZA [auth M022], TZA [auth M023], UZA [auth M024], XYA [auth M001], YYA [auth M002], ZYA [auth M003]	238	Bacteroides phage crAss001	Mutation(s): 0
UniProt
Find proteins for A0A385DVC3 (Bacteroides phage crAss001) Explore A0A385DVC3  Go to UniProtKB:  A0A385DVC3

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
Tail fiber protein gp22	AAB [auth O006], ABB [auth O032], BAB [auth O007], BBB [auth O033], CAB [auth O008], CBB [auth O034], DAB [auth O009], DBB [auth O035], EAB [auth O010], EBB [auth O036], FAB [auth O011], GAB [auth O012], HAB [auth O013], IAB [auth O014], JAB [auth O015], KAB [auth O016], LAB [auth O017], MAB [auth O018], NAB [auth O019], OAB [auth O020], PAB [auth O021], QAB [auth O022], RAB [auth O023], SAB [auth O024], TAB [auth O025], UAB [auth O026], VAB [auth O027], VZA [auth O001], WAB [auth O028], WZA [auth O002], XAB [auth O029], XZA [auth O003], YAB [auth O030], YZA [auth O004], ZAB [auth O031], ZZA [auth O005]	832	Bacteroides phage crAss001	Mutation(s): 0
UniProt
Find proteins for A0A385DVT1 (Bacteroides phage crAss001) Explore A0A385DVT1  Go to UniProtKB:  A0A385DVT1

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
Tail hub protein A gp38	ACB [auth P022], BCB [auth P023], CCB [auth P024], FBB [auth P001], GBB [auth P002], HBB [auth P003], IBB [auth P004], JBB [auth P005], KBB [auth P006], LBB [auth P007], MBB [auth P008], NBB [auth P009], OBB [auth P010], PBB [auth P011], QBB [auth P012], RBB [auth P013], SBB [auth P014], TBB [auth P015], UBB [auth P016], VBB [auth P017], WBB [auth P018], XBB [auth P019], YBB [auth P020], ZBB [auth P021]	215	Bacteroides phage crAss001	Mutation(s): 0
UniProt
Find proteins for A0A385DTH1 (Bacteroides phage crAss001) Explore A0A385DTH1  Go to UniProtKB:  A0A385DTH1

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
Tail hub protein B gp39	DCB [auth Q001], ECB [auth Q002], FCB [auth Q003], GCB [auth Q004], HCB [auth Q005], ICB [auth Q006], JCB [auth Q007], KCB [auth Q008], LCB [auth Q009], MCB [auth Q010], NCB [auth Q011], OCB [auth Q012]	114	Bacteroides phage crAss001	Mutation(s): 0
UniProt
Find proteins for A0A385DVM6 (Bacteroides phage crAss001) Explore A0A385DVM6  Go to UniProtKB:  A0A385DVM6

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MG	ADB [auth E120], AEB [auth E354], AFB [auth E508], BDB [auth E129], BEB [auth E363], BFB [auth E509], CDB [auth E138], CEB [auth E369], CFB [auth E512], DDB [auth E142], DEB [auth E378], DFB [auth E513], EDB [auth E151], EEB [auth E386], EFB [auth E515], FDB [auth E160], FEB [auth E395], FFB [auth E517], GDB [auth E173], GEB [auth E404], GFB [auth E530], HDB [auth E182], HEB [auth E418], HFB [auth H001], IDB [auth E191], IEB [auth E427], IFB [auth H002], JDB [auth E195], JEB [auth E436], JFB [auth H003], KDB [auth E204], KEB [auth E440], KFB [auth H004], LDB [auth E213], LEB [auth E449], LFB [auth H005], MDB [auth E221], MEB [auth E458], MFB [auth H006], NDB [auth E230], NEB [auth E471], NFB [auth H007], ODB [auth E236], OEB [auth E480], OFB [auth H008], PCB [auth E009], PDB [auth E245], PEB [auth E489], PFB [auth H009], QCB [auth E021], QDB [auth E254], QEB [auth E491], QFB [auth H010], RCB [auth E030], RDB [auth E269], REB [auth E492], RFB [auth H011], SCB [auth E044], SDB [auth E281], SEB [auth E493], SFB [auth H012], TCB [auth E053], TDB [auth E292], TEB [auth E494], UCB [auth E062], UDB [auth E301], UEB [auth E497], VCB [auth E071], VDB [auth E310], VEB [auth E499], WCB [auth E080], WDB [auth E314], WEB [auth E503], XCB [auth E088], XDB [auth E323], XEB [auth E505], YCB [auth E097], YDB [auth E332], YEB [auth E506], ZCB [auth E106], ZDB [auth E345], ZEB [auth E507]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 4.39 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2023-11-22 
Deposition Author(s): Bayfield, O.W., Shkoporov, A.N., Yutin, N., Khokhlova, E.V., Smith, J.L.R., Hawkins, D.E.D.P., Koonin, E.V., Hill, C., Antson, A.A.

---

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	206377

Revision History  

• Version 1.0: 2023-11-22
  Type: Initial release
  
• Version 2.0: 2023-11-29
  Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Polymer sequence, Structure summary
• Version 3.0: 2024-03-06
  Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Polymer sequence, Structure summary
• Version 3.1: 2024-10-16
  Changes: Structure summary