8CID

Crystal structure of Oryza sativa UAM 2

• PDB DOI: https://doi.org/10.2210/pdb8CID/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Oryza sativa
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2023-02-09 Released: 2024-02-21 
• Deposition Author(s): Fredslund, F., Adams, P.D., Welner, D.H.
• Funding Organization(s): Novo Nordisk Foundation

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.60 Å
• R-Value Free: 0.273 
• R-Value Work: 0.244 
• R-Value Observed: 0.247 

Literature

Crystal structure of Oryza sativa UAM 2

Fredslund, F., Adams, P.D., Welner, D.H.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 77.91 kDa 
• Atom Count: 5,424 
• Modelled Residue Count: 688 
• Deposited Residue Count: 694 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UDP-arabinopyranose mutase	A, B	347	Oryza sativa	Mutation(s): 0  Gene Names: amy, H0112G12.3 EC: 5.4.99.30
UniProt
Find proteins for Q7FAY6 (Oryza sativa subsp. japonica) Explore Q7FAY6  Go to UniProtKB:  Q7FAY6

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.60 Å
• R-Value Free: 0.273 
• R-Value Work: 0.244 
• R-Value Observed: 0.247 
• Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 115.39	α = 90
b = 115.39	β = 90
c = 157.9	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
MOSFLM	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-02-21 
Deposition Author(s): Fredslund, F., Adams, P.D., Welner, D.H.

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Funding Organization	Location	Grant Number
Novo Nordisk Foundation	Denmark	NNF20CC0035580

Revision History  

• Version 1.0: 2024-02-21
  Type: Initial release