8CID | pdb_00008cid

Crystal structure of Oryza sativa UAM 2

PDB DOI: https://doi.org/10.2210/pdb8CID/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Oryza sativa
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-02-09 Released: 2024-02-21
Deposition Author(s): Fredslund, F., Adams, P.D., Welner, D.H.
Funding Organization(s): Novo Nordisk Foundation

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.60 Å
R-Value Free:
0.273 (Depositor), 0.280 (DCC)
R-Value Work:
0.244 (Depositor), 0.250 (DCC)
R-Value Observed:
0.247 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of Oryza sativa UAM 2

Fredslund, F., Adams, P.D., Welner, D.H.

To be published.

Macromolecule Content

Total Structure Weight: 77.91 kDa
Atom Count: 5,424
Modeled Residue Count: 688
Deposited Residue Count: 694
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UDP-arabinopyranose mutase	A, B	347	Oryza sativa	Mutation(s): 0 Gene Names: amy, H0112G12.3 EC: 5.4.99.30
UniProt
Find proteins for Q7FAY6 (Oryza sativa subsp. japonica) Explore Q7FAY6 Go to UniProtKB: Q7FAY6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q7FAY6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.60 Å
R-Value Free: 0.273 (Depositor), 0.280 (DCC)
R-Value Work: 0.244 (Depositor), 0.250 (DCC)
R-Value Observed: 0.247 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 115.39	α = 90
b = 115.39	β = 90
c = 157.9	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
MOSFLM	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-02-21

Deposition Author(s):

Funding Organization	Location	Grant Number
Novo Nordisk Foundation	Denmark	NNF20CC0035580

Revision History (Full details and data files)

Version 1.0: 2024-02-21
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.