8CE8

Cytochrome c maturation complex CcmABCDE


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.81 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Architecture of the Heme-translocating CcmABCD/E complex required for Cytochrome c maturation.

Ilcu, L.Denkhaus, L.Brausemann, A.Zhang, L.Einsle, O.

(2023) Nat Commun 14: 5190-5190

  • DOI: https://doi.org/10.1038/s41467-023-40881-y
  • Primary Citation of Related Structures:  
    8CE1, 8CE5, 8CE8, 8CEA

  • PubMed Abstract: 

    Mono- and multiheme cytochromes c are post-translationally matured by the covalent attachment of heme. For this, Escherichia coli employs the most complex type of maturation machineries, the Ccm-system (for cytochrome c maturation). It consists of two membrane protein complexes, one of which shuttles heme across the membrane to a mobile chaperone that then delivers the cofactor to the second complex, an apoprotein:heme lyase, for covalent attachment. Here we report cryo-electron microscopic structures of the heme translocation complex CcmABCD from E. coli, alone and bound to the heme chaperone CcmE. CcmABCD forms a heterooctameric complex centered around the ABC transporter CcmAB that does not by itself transport heme. Our data suggest that the complex flops a heme group from the inner to the outer leaflet at its CcmBC interfaces, driven by ATP hydrolysis at CcmA. A conserved heme-handling motif (WxWD) at the periplasmic side of CcmC rotates the heme by 90° for covalent attachment to the heme chaperone CcmE that we find interacting exclusively with the CcmB subunit.


  • Organizational Affiliation

    Institut für Biochemie, Albert-Ludwigs-Universität Freiburg, 79104, Freiburg im Breisgau, Germany.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c biogenesis ATP-binding export protein CcmAA,
E [auth a]
218Escherichia coli K-12Mutation(s): 0 
Gene Names: ccmAyejWb2201JW5366
EC: 7.6.2.5
Membrane Entity: Yes 
UniProt
Find proteins for P33931 (Escherichia coli (strain K12))
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Go to UniProtKB:  P33931
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UniProt GroupP33931
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Heme exporter protein BB,
F [auth b]
220Escherichia coli K-12Mutation(s): 0 
Gene Names: ccmByejVb2200JW2188
Membrane Entity: Yes 
UniProt
Find proteins for P0ABL8 (Escherichia coli (strain K12))
Explore P0ABL8 
Go to UniProtKB:  P0ABL8
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UniProt GroupP0ABL8
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Heme exporter protein CC,
G [auth c]
245Escherichia coli K-12Mutation(s): 0 
Gene Names: ccmCyejTyejUb2199JW2187
Membrane Entity: Yes 
UniProt
Find proteins for P0ABM1 (Escherichia coli (strain K12))
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Go to UniProtKB:  P0ABM1
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UniProt GroupP0ABM1
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Heme exporter protein DD,
H [auth d]
69Escherichia coli K-12Mutation(s): 0 
Gene Names: ccmDyojMb2198JW2186
Membrane Entity: Yes 
UniProt
Find proteins for P0ABM5 (Escherichia coli (strain K12))
Explore P0ABM5 
Go to UniProtKB:  P0ABM5
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UniProt GroupP0ABM5
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c-type biogenesis protein CcmEI [auth E]159Escherichia coli K-12Mutation(s): 0 
Gene Names: ccmEyejSb2197JW2185
Membrane Entity: Yes 
UniProt
Find proteins for P69490 (Escherichia coli (strain K12))
Explore P69490 
Go to UniProtKB:  P69490
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UniProt GroupP69490
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.81 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union310656
German Research Foundation (DFG)Germany403222702
German Research Foundation (DFG)Germany192904750
German Research Foundation (DFG)Germany46710898

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-06
    Type: Initial release