Download MendeleyFocused refinement of the soluble domain of Adenylyl cyclase 8 bound to stimulatory G protein, Forskolin, ATPalphaS, and Ca2+/Calmodulin in lipid nanodisc
Khanppnavar, B., Korkhov, V.M.To be published.
8BV5
Focus refinement of soluble domain of Adenylyl cyclase 8 bound to stimulatory G protein, Forskolin, ATPalphaS, and Ca2+/Calmodulin in lipid nanodisc conditions
- PDB DOI: https://doi.org/10.2210/pdb8BV5/pdb
- EM Map EMD-16255: EMDB EMDataResource
- Classification: MEMBRANE PROTEIN
- Organism(s): Bos taurus
- Expression System: Homo sapiens, Trichoplusia ni
- Mutation(s): No
- Deposited: 2023-01-04 Released: 2024-01-17
- Funding Organization(s): Swiss National Science Foundation
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.54 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Adenylate cyclase type 8 | 1,253 | Bos taurus | Mutation(s): 0 Gene Names: ADCY8 EC: 4.6.1.1 |  | |
UniProt | |||||
Find proteins for E1BQ12 (Bos taurus) Explore E1BQ12 Go to UniProtKB: E1BQ12 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | E1BQ12 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | 405 | Bos taurus | Mutation(s): 0 Gene Names: GNAS, GNAS1 |  | |
UniProt | |||||
Find proteins for P04896 (Bos taurus) Explore P04896 Go to UniProtKB: P04896 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P04896 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GSP (Subject of Investigation/LOI) Query on GSP | D [auth B] | 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE C10 H16 N5 O13 P3 S XOFLBQFBSOEHOG-UUOKFMHZSA-N |  | ||
| FOK (Subject of Investigation/LOI) Query on FOK | C [auth A] | FORSKOLIN C22 H34 O7 OHCQJHSOBUTRHG-KGGHGJDLSA-N |  | ||
| MG (Subject of Investigation/LOI) Query on MG | E [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.54 Å
- Aggregation State: PARTICLE
- Reconstruction Method: SINGLE PARTICLE
| Task | Software Package | Version |
|---|---|---|
| RECONSTRUCTION | RELION | 3.1.3 |
| MODEL REFINEMENT | PHENIX | 1.20-4459 |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-01-17 Deposition Author(s): Khanppnavar, B., Korkhov, V.M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Swiss National Science Foundation | Switzerland | 198545 |
| Swiss National Science Foundation | Switzerland | 184951 |
Revision History (Full details and data files)
- Version 1.0: 2024-01-17
Type: Initial release
