8BPI

Human Gamma-D crystallin R36S mutant after UV illumination

• PDB DOI: https://doi.org/10.2210/pdb8BPI/pdb

• Classification: STRUCTURAL PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): Yes 


• Deposited: 2022-11-16 Released: 2023-11-29 
• Deposition Author(s): Yorke, B.A., Hill, J.A.
• Funding Organization(s): Wellcome Trust

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.241 
• R-Value Work: 0.197 

Literature

Human Gamma-D crystallin R36S mutant with DTT-Protein modification

Yorke, B.Y., Hill, J.A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 43.64 kDa 
• Atom Count: 3,012 
• Modelled Residue Count: 344 
• Deposited Residue Count: 364 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gamma-crystallin D	A [auth XXX]	182	Homo sapiens	Mutation(s): 1  Gene Names: CRYGD, CRYG4
UniProt & NIH Common Fund Data Resources
Find proteins for P07320 (Homo sapiens) Explore P07320  Go to UniProtKB:  P07320
PHAROS:  P07320 GTEx:  ENSG00000118231

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Gamma-crystallin D	B [auth AAA]	182	Homo sapiens	Mutation(s): 1  Gene Names: CRYGD, CRYG4
UniProt & NIH Common Fund Data Resources
Find proteins for P07320 (Homo sapiens) Explore P07320  Go to UniProtKB:  P07320
PHAROS:  P07320 GTEx:  ENSG00000118231

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
CSO	A [auth XXX]	L-PEPTIDE LINKING	C3 H7 N O3 S		CYS

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.241 
• R-Value Work: 0.197 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.9	α = 90
b = 83.7	β = 90
c = 101	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
CrystFEL	data reduction
CrystFEL	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-11-29 
Deposition Author(s): Yorke, B.A., Hill, J.A.

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Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	SBF0061044

Revision History  

• Version 1.0: 2023-11-29
  Type: Initial release