8Q3L

Human Gamma-D Crystallin R36S fresh serial crystallographic structure

PDB DOI: https://doi.org/10.2210/pdb8Q3L/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): Yes

Deposited: 2023-08-04 Released: 2024-04-17
Deposition Author(s): Yorke, B.A., Hill, J.A.
Funding Organization(s): Wellcome Trust

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.258
R-Value Work: 0.204
R-Value Observed: 0.206

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Human Gamma-D Crystallin R36S fresh serial crystallographic structure

Yorke, B.A., Hill, J.A.

To be published.

Macromolecule Content

Total Structure Weight: 43.56 kDa
Atom Count: 3,010
Modelled Residue Count: 345
Deposited Residue Count: 364
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gamma-crystallin D	A [auth X], B [auth A]	182	Homo sapiens	Mutation(s): 1 Gene Names: CRYGD
UniProt & NIH Common Fund Data Resources
Find proteins for P07320 (Homo sapiens) Explore P07320 Go to UniProtKB: P07320
PHAROS: P07320 GTEx: ENSG00000118231
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P07320
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.258
R-Value Work: 0.204
R-Value Observed: 0.206
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.6	α = 90
b = 83.7	β = 90
c = 100.4	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
CrystFEL	data scaling
CrystFEL	data reduction
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-04-17

Deposition Author(s):

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	SBF0061044

Revision History (Full details and data files)

Version 1.0: 2024-04-17
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.