8BHF | pdb_00008bhf

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

• PDB DOI: https://doi.org/10.2210/pdb8BHF/pdb
• NAKB: 8BHF
• EM Map EMD-16052: EMDB EMDataResource

• Classification: RIBOSOME
• Organism(s): Oryctolagus cuniculus, Homo sapiens
• Expression System: Spodoptera aff. frugiperda 1 BOLD-2017
• Mutation(s): Yes 


• Deposited: 2022-10-31 Released: 2023-09-06 
• Deposition Author(s): Absmeier, E., Chandrasekaran, V., O'Reilly, F.J., Stowell, J.A.W., Rappsilber, J., Passmore, L.A.
• Funding Organization(s): Medical Research Council (MRC, United Kingdom), German Research Foundation (DFG), Wellcome Trust

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.10 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Re-refinement Note

A newer entry is available that reflects an alternative modeling of the original data: 9C3I

Literature

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Gangwar, S.P., Yen, L.Y., Yelshanskaya, M.V., Korman, A., Jones, D.R., Sobolevsky, A.I.

(2023) Nat Struct Mol Biol 

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 80-mer - AA1AB1AC1AD1AE1AF1AG1AH1AI1AJ1AK1AL1AM1AN1AO1AP1AQ1AR1AS1AT1AU1AV1AW1AX1AY1AZ1Aa1Ab1Ac1Ad1Ae1Af1Ag1Ah1Ai1Aj1Ak1Al1Am1An1Ao1Ap1Aq1Ar1As1At1Au1Av1Aw1Ax1Ay1Az1BA1BB1BC1BD1BE1BF1BG1BH1BI1BJ1BK1BL1BM1BN1BO1BP1BQ1BR1BS1BT1BU1BV1BW1BX1BY1BZ1Ba1Bb1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 80-mer - AA2AB1AC1AD1AE1AF1AG1AH1AI1AJ1AK1AL1AM1AN1AO1AP1AQ1AR1AS1AT1AU1AV1AW1AX1AY1AZ1Aa1Ab1Ac1Ad1Ae1Af1Ag1Ah1Ai1Aj1Ak1Al1Am1An1Ao1Ap1Aq1Ar1As1At1Au1Av1Aw1Ax1Ay1Az1BA1BB1BC1BD1BE1BF1BG1BH1BI1BJ1BK1BL1BM1BN1BO1BP1BQ1BR1BS1BT1BU1BV1BW1BX1BY1BZ1Ba1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 3,706.65 kDa 
• Atom Count: 219,017 
• Modeled Residue Count: 17,808 
• Deposited Residue Count: 19,341 
• Unique protein chains: 80
• Unique nucleic acid chains: 6

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L15	A [auth A1]	203	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1T0C1 (Oryctolagus cuniculus) Explore G1T0C1  Go to UniProtKB:  G1T0C1

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L13a	B [auth B1]	199	Oryctolagus cuniculus	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L17	C [auth C1]	153	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SCJ6 (Oryctolagus cuniculus) Explore G1SCJ6  Go to UniProtKB:  G1SCJ6

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L18	D [auth D1]	187	Oryctolagus cuniculus	Mutation(s): 0

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L19	E [auth E1]	180	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TYL6 (Oryctolagus cuniculus) Explore G1TYL6  Go to UniProtKB:  G1TYL6

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18a	F [auth F1]	176	Oryctolagus cuniculus	Mutation(s): 0

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L21	G [auth G1]	159	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SHQ2 (Oryctolagus cuniculus) Explore G1SHQ2  Go to UniProtKB:  G1SHQ2

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L22	H [auth H1]	99	Oryctolagus cuniculus	Mutation(s): 0

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L23	I [auth I1]	139	Oryctolagus cuniculus	Mutation(s): 0

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
TRASH domain-containing protein	J [auth J1]	106	Oryctolagus cuniculus	Mutation(s): 0

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L23/L25 N-terminal domain-containing protein	K [auth K1]	118	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SE76 (Oryctolagus cuniculus) Explore G1SE76  Go to UniProtKB:  G1SE76

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L26	L [auth L1]	134	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SQH0 (Oryctolagus cuniculus) Explore G1SQH0  Go to UniProtKB:  G1SQH0

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27	M [auth M1]	135	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TXF6 (Oryctolagus cuniculus) Explore G1TXF6  Go to UniProtKB:  G1TXF6

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27a	N [auth N1]	147	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SNY0 (Oryctolagus cuniculus) Explore G1SNY0  Go to UniProtKB:  G1SNY0

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L29	O [auth O1]	116	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SGR6 (Oryctolagus cuniculus) Explore G1SGR6  Go to UniProtKB:  G1SGR6

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L30	P [auth P1]	98	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TDL2 (Oryctolagus cuniculus) Explore G1TDL2  Go to UniProtKB:  G1TDL2

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L31	Q [auth Q1]	107	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SHG0 (Oryctolagus cuniculus) Explore G1SHG0  Go to UniProtKB:  G1SHG0

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L32	R [auth R1]	128	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TUN8 (Oryctolagus cuniculus) Explore G1TUN8  Go to UniProtKB:  G1TUN8

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35a	S [auth S1]	109	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SF08 (Oryctolagus cuniculus) Explore G1SF08  Go to UniProtKB:  G1SF08

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L34	T [auth T1]	114	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TXG5 (Oryctolagus cuniculus) Explore G1TXG5  Go to UniProtKB:  G1TXG5

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35	U [auth U1]	122	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SIT5 (Oryctolagus cuniculus) Explore G1SIT5  Go to UniProtKB:  G1SIT5

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L36	V [auth V1]	102	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TBH2 (Oryctolagus cuniculus) Explore G1TBH2  Go to UniProtKB:  G1TBH2

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L37	W [auth W1]	86	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for U3KPD5 (Oryctolagus cuniculus) Explore U3KPD5  Go to UniProtKB:  U3KPD5

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L38	X [auth X1]	69	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1U001 (Oryctolagus cuniculus) Explore G1U001  Go to UniProtKB:  G1U001

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L39-like	Y [auth Y1]	50	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SYU7 (Oryctolagus cuniculus) Explore G1SYU7  Go to UniProtKB:  G1SYU7

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-60S ribosomal protein L40	Z [auth Z1]	52	Oryctolagus cuniculus	Mutation(s): 0

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L41	AA [auth a1]	25	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for A0A087WNH4 (Oryctolagus cuniculus) Explore A0A087WNH4  Go to UniProtKB:  A0A087WNH4

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L36a like	BA [auth b1]	104	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1T040 (Oryctolagus cuniculus) Explore G1T040  Go to UniProtKB:  G1T040

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37a	CA [auth c1]	91	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SY53 (Oryctolagus cuniculus) Explore G1SY53  Go to UniProtKB:  G1SY53

Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L28	DA [auth d1]	124	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1U7L1 (Oryctolagus cuniculus) Explore G1U7L1  Go to UniProtKB:  G1U7L1

Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
60S acidic ribosomal protein P0	EA [auth e1]	196	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SPK4 (Oryctolagus cuniculus) Explore G1SPK4  Go to UniProtKB:  G1SPK4

Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L12	FA [auth f1]	153	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SMR7 (Oryctolagus cuniculus) Explore G1SMR7  Go to UniProtKB:  G1SMR7

Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L10a	GA [auth l1]	206	Oryctolagus cuniculus	Mutation(s): 0

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
CCR4-NOT transcription complex subunit 3	IA [auth n1]	236	Homo sapiens	Mutation(s): 0  Gene Names: CNOT3
UniProt & NIH Common Fund Data Resources
Find proteins for B7Z6J7 (Homo sapiens) Explore B7Z6J7  Go to UniProtKB:  B7Z6J7
GTEx:  ENSG00000088038

Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
nascent chain	KA [auth 11]	5	Oryctolagus cuniculus	Mutation(s): 0

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
40S_SA_C domain-containing protein	PA [auth B3]	217	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TLT8 (Oryctolagus cuniculus) Explore G1TLT8  Go to UniProtKB:  G1TLT8

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S3a	QA [auth C3]	213	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SS70 (Oryctolagus cuniculus) Explore G1SS70  Go to UniProtKB:  G1SS70

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S2	RA [auth D3]	221	Oryctolagus cuniculus	Mutation(s): 0

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein S3	SA [auth E3]	228	Oryctolagus cuniculus	Mutation(s): 0  EC: 4.2.99.18
UniProt
Find proteins for G1TNM3 (Oryctolagus cuniculus) Explore G1TNM3  Go to UniProtKB:  G1TNM3

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S4	TA [auth F3]	262	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TK17 (Oryctolagus cuniculus) Explore G1TK17  Go to UniProtKB:  G1TK17

Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein S5	UA [auth G3]	191	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TFM5 (Oryctolagus cuniculus) Explore G1TFM5  Go to UniProtKB:  G1TFM5

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S6	VA [auth H3]	237	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TM55 (Oryctolagus cuniculus) Explore G1TM55  Go to UniProtKB:  G1TM55

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S7	WA [auth I3]	189	Oryctolagus cuniculus	Mutation(s): 0

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S8	XA [auth J3]	206	Oryctolagus cuniculus	Mutation(s): 1
UniProt
Find proteins for G1TJW1 (Oryctolagus cuniculus) Explore G1TJW1  Go to UniProtKB:  G1TJW1

Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein S9 (Predicted)	YA [auth K3]	185	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for B7NZS8 (Oryctolagus cuniculus) Explore B7NZS8  Go to UniProtKB:  B7NZS8

Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
Plectin/S10 N-terminal domain-containing protein	ZA [auth L3]	96	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1T168 (Oryctolagus cuniculus) Explore G1T168  Go to UniProtKB:  G1T168

Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S11	AB [auth M3]	151	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TRM4 (Oryctolagus cuniculus) Explore G1TRM4  Go to UniProtKB:  G1TRM4

Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S12	BB [auth N3]	117	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SFR8 (Oryctolagus cuniculus) Explore G1SFR8  Go to UniProtKB:  G1SFR8

Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
ribosomal protein uS15	CB [auth O3]	149	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SP51 (Oryctolagus cuniculus) Explore G1SP51  Go to UniProtKB:  G1SP51

Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein S14	DB [auth P3]	136	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1T1F0 (Oryctolagus cuniculus) Explore G1T1F0  Go to UniProtKB:  G1T1F0

Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S15	EB [auth Q3]	129	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1U0Q2 (Oryctolagus cuniculus) Explore G1U0Q2  Go to UniProtKB:  G1U0Q2

Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein S16	FB [auth R3]	142	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SGX4 (Oryctolagus cuniculus) Explore G1SGX4  Go to UniProtKB:  G1SGX4

Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S17	GB [auth S3]	132	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TU13 (Oryctolagus cuniculus) Explore G1TU13  Go to UniProtKB:  G1TU13

Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S18	HB [auth T3]	144	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TPG3 (Oryctolagus cuniculus) Explore G1TPG3  Go to UniProtKB:  G1TPG3

Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S19	IB [auth U3]	141	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TN62 (Oryctolagus cuniculus) Explore G1TN62  Go to UniProtKB:  G1TN62

Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein S20	JB [auth V3]	100	Oryctolagus cuniculus	Mutation(s): 0

Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S21	KB [auth W3]	83	Oryctolagus cuniculus	Mutation(s): 0

Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein S15a	LB [auth X3]	129	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TG89 (Oryctolagus cuniculus) Explore G1TG89  Go to UniProtKB:  G1TG89

Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein S23	MB [auth Y3]	141	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SZ47 (Oryctolagus cuniculus) Explore G1SZ47  Go to UniProtKB:  G1SZ47

Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S24	NB [auth Z3]	124	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for A0A5F9D2E6 (Oryctolagus cuniculus) Explore A0A5F9D2E6  Go to UniProtKB:  A0A5F9D2E6

Entity ID: 67
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S25	OB [auth a3]	75	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TDB3 (Oryctolagus cuniculus) Explore G1TDB3  Go to UniProtKB:  G1TDB3

Entity ID: 68
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S26	PB [auth b3]	101	Oryctolagus cuniculus	Mutation(s): 0

Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S27	QB [auth c3]	83	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TZ76 (Oryctolagus cuniculus) Explore G1TZ76  Go to UniProtKB:  G1TZ76

Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein S28	RB [auth d3]	62	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TIB4 (Oryctolagus cuniculus) Explore G1TIB4  Go to UniProtKB:  G1TIB4

Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S29	SB [auth e3]	55	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1U7M4 (Oryctolagus cuniculus) Explore G1U7M4  Go to UniProtKB:  G1U7M4

Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-like domain-containing protein	TB [auth f3]	57	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for A0A5F9D9G5 (Oryctolagus cuniculus) Explore A0A5F9D9G5  Go to UniProtKB:  A0A5F9D9G5

Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin-40S ribosomal protein S27a	UB [auth g3]	68	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SK22 (Oryctolagus cuniculus) Explore G1SK22  Go to UniProtKB:  G1SK22

Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein RACK1	VB [auth h3]	313	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SJB4 (Oryctolagus cuniculus) Explore G1SJB4  Go to UniProtKB:  G1SJB4

Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L8	WB [auth j3]	248	Oryctolagus cuniculus	Mutation(s): 0

Entity ID: 76
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L3	XB [auth k3]	394	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TL06 (Oryctolagus cuniculus) Explore G1TL06  Go to UniProtKB:  G1TL06

Entity ID: 77
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L4	YB [auth l3]	362	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SVW5 (Oryctolagus cuniculus) Explore G1SVW5  Go to UniProtKB:  G1SVW5

Entity ID: 78
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L5	ZB [auth m3]	293	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for P19949 (Oryctolagus cuniculus) Explore P19949  Go to UniProtKB:  P19949

Entity ID: 79
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L6	AC [auth n3]	251	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SKF7 (Oryctolagus cuniculus) Explore G1SKF7  Go to UniProtKB:  G1SKF7

Entity ID: 80
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7	BC [auth o3]	225	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SV32 (Oryctolagus cuniculus) Explore G1SV32  Go to UniProtKB:  G1SV32

Entity ID: 81
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7a	CC [auth p3]	240	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1STW0 (Oryctolagus cuniculus) Explore G1STW0  Go to UniProtKB:  G1STW0

Entity ID: 82
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L9	DC [auth q3]	190	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SWI6 (Oryctolagus cuniculus) Explore G1SWI6  Go to UniProtKB:  G1SWI6

Entity ID: 83
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L10	EC [auth r3]	213	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for B7NZQ2 (Oryctolagus cuniculus) Explore B7NZQ2  Go to UniProtKB:  B7NZQ2

Entity ID: 84
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L11	FC [auth s3]	170	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TUB8 (Oryctolagus cuniculus) Explore G1TUB8  Go to UniProtKB:  G1TUB8

Entity ID: 85
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L13	GC [auth t3]	210	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1TKB3 (Oryctolagus cuniculus) Explore G1TKB3  Go to UniProtKB:  G1TKB3

Entity ID: 86
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L14	HC [auth u3]	138	Oryctolagus cuniculus	Mutation(s): 0
UniProt
Find proteins for G1SZ12 (Oryctolagus cuniculus) Explore G1SZ12  Go to UniProtKB:  G1SZ12

Entity ID: 34
Molecule	Chains	Length	Organism	Image
mRNA	HA [auth m1]	3	Oryctolagus cuniculus

Entity ID: 36
Molecule	Chains	Length	Organism	Image
P-site tRNA	JA [auth 21]	76	Oryctolagus cuniculus

Entity ID: 38
Molecule	Chains	Length	Organism	Image
28S ribosomal RNA	LA [auth A2]	5,051	Oryctolagus cuniculus

Entity ID: 39
Molecule	Chains	Length	Organism	Image
5S ribosomal RNA	MA [auth B2]	119	Oryctolagus cuniculus

Entity ID: 40
Molecule	Chains	Length	Organism	Image
5.8S ribosomal RNA	NA [auth C2]	156	Oryctolagus cuniculus

Entity ID: 41
Molecule	Chains	Length	Organism	Image
18S ribosomal RNA	OA [auth A3]	1,697	Oryctolagus cuniculus

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	AN [auth b3], BN [auth e3], LC [auth T1], NC [auth W1], OC [auth Z1], PC [auth b1], QC [auth c1]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG	AD [auth A2], AE [auth A2], AF [auth A2], AG [auth A2], AH [auth A2], AI [auth A2], AJ [auth A2], AK [auth B2], AL [auth A3], AM [auth A3], BD [auth A2], BE [auth A2], BF [auth A2], BG [auth A2], BH [auth A2], BI [auth A2], BJ [auth A2], BK [auth B2], BL [auth A3], BM [auth A3], CD [auth A2], CE [auth A2], CF [auth A2], CG [auth A2], CH [auth A2], CI [auth A2], CJ [auth A2], CK [auth B2], CL [auth A3], CM [auth A3], CN [auth j3], DD [auth A2], DE [auth A2], DF [auth A2], DG [auth A2], DH [auth A2], DI [auth A2], DJ [auth A2], DK [auth B2], DL [auth A3], DM [auth A3], DN [auth r3], ED [auth A2], EE [auth A2], EF [auth A2], EG [auth A2], EH [auth A2], EI [auth A2], EJ [auth A2], EK [auth C2], EL [auth A3], EM [auth A3], FD [auth A2], FE [auth A2], FF [auth A2], FG [auth A2], FH [auth A2], FI [auth A2], FJ [auth A2], FK [auth C2], FL [auth A3], FM [auth A3], GD [auth A2], GE [auth A2], GF [auth A2], GG [auth A2], GH [auth A2], GI [auth A2], GJ [auth A2], GK [auth C2], GL [auth A3], GM [auth A3], HD [auth A2], HE [auth A2], HF [auth A2], HG [auth A2], HH [auth A2], HI [auth A2], HJ [auth A2], HK [auth C2], HL [auth A3], HM [auth A3], IC [auth C1], ID [auth A2], IE [auth A2], IF [auth A2], IG [auth A2], IH [auth A2], II [auth A2], IJ [auth A2], IK [auth A3], IL [auth A3], IM [auth A3], JC [auth I1], JD [auth A2], JE [auth A2], JF [auth A2], JG [auth A2], JH [auth A2], JI [auth A2], JJ [auth A2], JK [auth A3], JL [auth A3], JM [auth A3], KC [auth N1], KD [auth A2], KE [auth A2], KF [auth A2], KG [auth A2], KH [auth A2], KI [auth A2], KJ [auth A2], KK [auth A3], KL [auth A3], KM [auth A3], LD [auth A2], LE [auth A2], LF [auth A2], LG [auth A2], LH [auth A2], LI [auth A2], LJ [auth A2], LK [auth A3], LL [auth A3], LM [auth A3], MC [auth T1], MD [auth A2], ME [auth A2], MF [auth A2], MG [auth A2], MH [auth A2], MI [auth A2], MJ [auth A2], MK [auth A3], ML [auth A3], MM [auth A3], ND [auth A2], NE [auth A2], NF [auth A2], NG [auth A2], NH [auth A2], NI [auth A2], NJ [auth A2], NK [auth A3], NL [auth A3], NM [auth A3], OD [auth A2], OE [auth A2], OF [auth A2], OG [auth A2], OH [auth A2], OI [auth A2], OJ [auth A2], OK [auth A3], OL [auth A3], OM [auth A3], PD [auth A2], PE [auth A2], PF [auth A2], PG [auth A2], PH [auth A2], PI [auth A2], PJ [auth A2], PK [auth A3], PL [auth A3], PM [auth A3], QD [auth A2], QE [auth A2], QF [auth A2], QG [auth A2], QH [auth A2], QI [auth A2], QJ [auth A2], QK [auth A3], QL [auth A3], QM [auth A3], RC [auth A2], RD [auth A2], RE [auth A2], RF [auth A2], RG [auth A2], RH [auth A2], RI [auth A2], RJ [auth A2], RK [auth A3], RL [auth A3], RM [auth A3], SC [auth A2], SD [auth A2], SE [auth A2], SF [auth A2], SG [auth A2], SH [auth A2], SI [auth A2], SJ [auth A2], SK [auth A3], SL [auth A3], SM [auth A3], TC [auth A2], TD [auth A2], TE [auth A2], TF [auth A2], TG [auth A2], TH [auth A2], TI [auth A2], TJ [auth A2], TK [auth A3], TL [auth A3], TM [auth A3], UC [auth A2], UD [auth A2], UE [auth A2], UF [auth A2], UG [auth A2], UH [auth A2], UI [auth A2], UJ [auth A2], UK [auth A3], UL [auth A3], UM [auth A3], VC [auth A2], VD [auth A2], VE [auth A2], VF [auth A2], VG [auth A2], VH [auth A2], VI [auth A2], VJ [auth A2], VK [auth A3], VL [auth A3], VM [auth A3], WC [auth A2], WD [auth A2], WE [auth A2], WF [auth A2], WG [auth A2], WH [auth A2], WI [auth A2], WJ [auth A2], WK [auth A3], WL [auth A3], WM [auth A3], XC [auth A2], XD [auth A2], XE [auth A2], XF [auth A2], XG [auth A2], XH [auth A2], XI [auth A2], XJ [auth A2], XK [auth A3], XL [auth A3], XM [auth A3], YC [auth A2], YD [auth A2], YE [auth A2], YF [auth A2], YG [auth A2], YH [auth A2], YI [auth A2], YJ [auth B2], YK [auth A3], YL [auth A3], YM [auth A3], ZC [auth A2], ZD [auth A2], ZE [auth A2], ZF [auth A2], ZG [auth A2], ZH [auth A2], ZI [auth A2], ZJ [auth B2], ZK [auth A3], ZL [auth A3], ZM [auth M3]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.10 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-09-06 
Deposition Author(s): Absmeier, E., Chandrasekaran, V., O'Reilly, F.J., Stowell, J.A.W., Rappsilber, J., Passmore, L.A.

---

Funding Organization	Location	Grant Number
Medical Research Council (MRC, United Kingdom)	United Kingdom	MC_U105192715
German Research Foundation (DFG)	Germany	429892960
Medical Research Council (MRC, United Kingdom)	United Kingdom	MC_U105184332
Wellcome Trust	United Kingdom	WT096570
Wellcome Trust	United Kingdom	203149

Revision History  

• Version 1.0: 2023-09-06
  Type: Initial release
  
• Version 1.1: 2023-09-13
  Changes: Database references
• Version 1.2: 2023-11-01
  Changes: Database references
• Version 1.3: 2024-11-13
  Changes: Data collection, Structure summary
• Version 1.4: 2025-07-02
  Changes: Data collection, Database references