8BF9

Molecular view of ER membrane remodeling by the Sec61/TRAP translocon.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.69 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Molecular view of ER membrane remodeling by the Sec61/TRAP translocon.

Karki, S.Javanainen, M.Rehan, S.Tranter, D.Kellosalo, J.Huiskonen, J.T.Happonen, L.Paavilainen, V.

(2023) EMBO Rep 24: e57910-e57910

  • DOI: https://doi.org/10.15252/embr.202357910
  • Primary Citation of Related Structures:  
    8BF9

  • PubMed Abstract: 

    Protein translocation across the endoplasmic reticulum (ER) membrane is an essential step during protein entry into the secretory pathway. The conserved Sec61 protein-conducting channel facilitates polypeptide translocation and coordinates cotranslational polypeptide-processing events. In cells, the majority of Sec61 is stably associated with a heterotetrameric membrane protein complex, the translocon-associated protein complex (TRAP), yet the mechanism by which TRAP assists in polypeptide translocation remains unknown. Here, we present the structure of the core Sec61/TRAP complex bound to a mammalian ribosome by cryogenic electron microscopy (cryo-EM). Ribosome interactions anchor the Sec61/TRAP complex in a conformation that renders the ER membrane locally thinner by significantly curving its lumenal leaflet. We propose that TRAP stabilizes the ribosome exit tunnel to assist nascent polypeptide insertion through Sec61 and provides a ratcheting mechanism into the ER lumen mediated by direct polypeptide interactions.


  • Organizational Affiliation

    Institute of Biotechnology, University of Helsinki, Helsinki, Finland.


Macromolecules

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Translocon-associated protein subunit alphaC [auth A]353Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
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UniProt GroupA0A835ZQN5
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Translocon-associated protein subunit betaD [auth B]186Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for W5P572 (Ovis aries)
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Translocon-associated protein subunit deltaE [auth D]173Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Translocon-associated protein subunit gammaF [auth G]185Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL22G [auth P]184Ovis ariesMutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L19H [auth R]196Ovis ariesMutation(s): 0 
UniProt
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
RL22 protein (Fragment)I [auth U]128Ovis ariesMutation(s): 0 
UniProt
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L23/L25 N-terminal domain-containing proteinJ [auth X]156Ovis ariesMutation(s): 0 
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
RL26 protein (Fragment)K [auth Y]134Ovis ariesMutation(s): 0 
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Sec61aL [auth C]475Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
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UniProt GroupA0A6P3YN15
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Sec61bM [auth b]29Ovis ariesMutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL31N [auth d]125Ovis ariesMutation(s): 0 
UniProt
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Protein transport protein Sec61 subunit gammaO [auth g]81Ovis ariesMutation(s): 0 
Membrane Entity: Yes 
UniProt
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL29P [auth h]123Ovis ariesMutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L37Q [auth j]97Ovis ariesMutation(s): 0 
UniProt
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein eL38R [auth k]70Ovis ariesMutation(s): 0 
UniProt
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L39S [auth l]51Ovis ariesMutation(s): 0 
UniProt
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UniProt GroupA0A6P3TG10
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Entity ID: 1
MoleculeChains LengthOrganismImage
RNA (1766)A [auth 5]3,662Ovis aries
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Entity ID: 2
MoleculeChains LengthOrganismImage
RNA (156-MER)B [auth 8]156Ovis aries
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.69 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Academy of FinlandFinland338836
Jane and Aatos Erkko FoundationFinland--

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-01
    Type: Initial release
  • Version 1.1: 2023-12-06
    Changes: Database references
  • Version 1.2: 2023-12-20
    Changes: Database references