8BF9 | pdb_00008bf9

Molecular view of ER membrane remodeling by the Sec61/TRAP translocon.

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I [auth U]	Ku_PK_bind	e8bf9U1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Ku_PK_bind	ECOD (v294.1)
G [auth P]	Ku_PK_bind	e8bf9P1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Ku_PK_bind	ECOD (v294.1)
D [auth B]	Ku_PK_bind	e8bf9B1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Ku_PK_bind	ECOD (v294.1)
C [auth A]	Ku_PK_bind	e8bf9A1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Ku_PK_bind	ECOD (v294.1)
S [auth l]	Ku_PK_bind	e8bf9l1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Ku_PK_bind	ECOD (v294.1)
R [auth k]	Ku_PK_bind	e8bf9k1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Ku_PK_bind	ECOD (v294.1)
Q [auth j]	Ku_PK_bind	e8bf9j1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Ku_PK_bind	ECOD (v294.1)
P [auth h]	Ku_PK_bind	e8bf9h1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Ku_PK_bind	ECOD (v294.1)
O [auth g]	Ku_PK_bind	e8bf9g1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Ku_PK_bind	ECOD (v294.1)
N [auth d]	Ku_PK_bind	e8bf9d1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Ku_PK_bind	ECOD (v294.1)
L [auth C]	Ku_PK_bind	e8bf9C1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Ku_PK_bind	ECOD (v294.1)
K [auth Y]	Ku_PK_bind	e8bf9Y1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Ku_PK_bind	ECOD (v294.1)
J [auth X]	Ku_PK_bind	e8bf9X1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Ku_PK_bind	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G [auth P]	PF00237	Ribosomal protein L22p/L17e (Ribosomal_L22)	Ribosomal protein L22p/L17e	This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.	Domain
J [auth X]	PF00276	Ribosomal protein L23 (Ribosomal_L23)	Ribosomal protein L23	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth U]	RL22 protein (Fragment)	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
H [auth R]	Ribosomal protein L19	-	-	-
G [auth P]	Large ribosomal subunit protein uL22	structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
F [auth G]	Translocon-associated protein subunit gamma	-	-	-
E [auth D]	Translocon-associated protein subunit delta	-	-	-
D [auth B]	Translocon-associated protein subunit beta	-	-	-
C [auth A]	Translocon-associated protein subunit alpha	-	-	membrane-bounded organelle intracellular anatomical structure organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane membrane-bounded organelle intracellular anatomical structure organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum membrane
B [auth 8]	RNA (156-MER)	-	-	-
S [auth l]	60S ribosomal protein L39	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
R [auth k]	Large ribosomal subunit protein eL38	structural molecule activity structural constituent of ribosome	cellular component organization cellular component biogenesis ribonucleoprotein complex biogenesis protein-RNA complex organization cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis protein-RNA complex assembly biosynthetic process metabolic process primary metabolic process protein metabolic process cellular component organization cellular component biogenesis ribonucleoprotein complex biogenesis protein-RNA complex organization cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis protein-RNA complex assembly biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
Q [auth j]	Ribosomal protein L37	-	-	-
P [auth h]	Large ribosomal subunit protein uL29	RNA binding binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process ribosomal large subunit biogenesis macromolecule biosynthetic process nucleic acid metabolic process maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biosynthetic process cellular process metabolic process macromolecule metabolic process maturation of LSU-rRNA protein metabolic process translation protein biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
O [auth g]	Protein transport protein Sec61 subunit gamma	macromolecule transmembrane transporter activity protein transporter activity transmembrane protein transporter activity transporter activity transmembrane transporter activity	cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization cellular process intracellular protein localization intracellular protein transport protein targeting	membrane-bounded organelle intracellular anatomical structure organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane membrane-bounded organelle intracellular anatomical structure organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum membrane
N [auth d]	Large ribosomal subunit protein eL31	-	-	-
M [auth b]	Sec61b	-	-	-
L [auth C]	Sec61a	-	localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization	membrane-bounded organelle intracellular anatomical structure organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane membrane-bounded organelle intracellular anatomical structure organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum membrane
K [auth Y]	RL26 protein (Fragment)	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	membrane-bounded organelle cellular anatomical structure organelle membrane organelle membrane protein-containing complex intracellular anatomical structure intracellular membraneless organelle ribosomal subunit intracellular organelle ribonucleoprotein complex membraneless organelle ribosome large ribosomal subunit
J [auth X]	Ribosomal protein L23/L25 N-terminal domain-containing protein	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding protein-containing complex binding TORC2 complex binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit membrane-bounded organelle nucleus intracellular membrane-bounded organelle
A [auth 5]	RNA (1766)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth U]	IPR002671	Large ribosomal subunit protein eL22	Family
I [auth U]	IPR038526	Large ribosomal subunit protein eL22 superfamily	Homologous Superfamily
G [auth P]	IPR018260	Large ribosomal subunit protein uL22, conserved site	Conserved Site
G [auth P]	IPR005721	Large ribosomal subunit protein uL22, eukaryota/archaea	Family
G [auth P]	IPR036394	Ribosomal protein uL22 superfamily	Homologous Superfamily
G [auth P]	IPR001063	Large ribosomal subunit protein uL22	Family
G [auth P]	IPR057265	Large ribosomal subunit protein uL22, archaea	Family
C [auth A]	IPR005595	Translocon-associated protein (TRAP), alpha subunit	Family
S [auth l]	IPR023626	Large ribosomal subunit protein eL39 domain superfamily	Homologous Superfamily
S [auth l]	IPR000077	Large ribosomal subunit protein eL39	Family
S [auth l]	IPR020083	Large ribosomal subunit protein eL39, conserved site	Conserved Site
R [auth k]	IPR002675	Large ribosomal subunit protein eL38	Family
R [auth k]	IPR038464	Large ribosomal subunit protein eL38 superfamily	Homologous Superfamily
P [auth h]	IPR001854	Large ribosomal subunit protein uL29	Family
P [auth h]	IPR036049	Large ribosomal subunit protein uL29 superfamily	Homologous Superfamily
P [auth h]	IPR018254	Large ribosomal subunit protein uL29, conserved site	Conserved Site
P [auth h]	IPR045059	Large ribosomal subunit protein uL29, eukaryota	Family
O [auth g]	IPR008158	Protein translocase SEC61 complex, gamma subunit	Family
O [auth g]	IPR001901	Protein translocase complex, SecE/Sec61-gamma subunit	Family
O [auth g]	IPR023391	Protein translocase SecE domain superfamily	Homologous Superfamily
L [auth C]	IPR002208	SecY/SEC61-alpha family	Family
L [auth C]	IPR030659	SecY conserved site	Conserved Site
L [auth C]	IPR019561	Translocon Sec61/SecY, plug domain	Domain
L [auth C]	IPR023201	SecY domain superfamily	Homologous Superfamily
K [auth Y]	IPR005756	Large ribosomal subunit protein uL24, eukaryota_archaea	Family
K [auth Y]	IPR041988	Large ribosomal subunit protein uL24, KOW domain	Domain
K [auth Y]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
K [auth Y]	IPR005824	KOW	Domain
K [auth Y]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
K [auth Y]	IPR005825	Large ribosomal subunit protein uL24, conserved site	Conserved Site
J [auth X]	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
J [auth X]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
J [auth X]	IPR005633	Large ribosomal subunit protein uL23, N-terminal	Domain
J [auth X]	IPR019985	Large ribosomal subunit protein uL23	Family
J [auth X]	IPR001014	Large ribosomal subunit protein uL23, conserved site	Conserved Site
J [auth X]	IPR013025	Large ribosomal subunit protein uL23-like	Family