8BF9

Molecular view of ER membrane remodeling by the Sec61/TRAP translocon.


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth A]PF03896e8bf9A1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF03896ECOD (1.6)
C [auth A]F_UNCLASSIFIEDe8bf9A2 A: extended segmentsX: Notch transmembrane helix (From Topology)H: Notch transmembrane helix (From Topology)T: Notch transmembrane helixF: F_UNCLASSIFIEDECOD (1.6)
P [auth h]PF00831e8bf9h1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
J [auth X]PF00276,PF03939e8bf9X1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
K [auth Y]PF16906e8bf9Y1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
L [auth C]PF00344,PF10559e8bf9C1 A: alpha complex topologyX: Preprotein translocase SecY subunit (From Topology)H: Preprotein translocase SecY subunit (From Topology)T: Preprotein translocase SecY subunitF: PF00344,PF10559ECOD (1.6)
N [auth d]PF01198e8bf9d1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
O [auth g]PF00584e8bf9g1 A: extended segmentsX: Preprotein translocase SecE subunit (From Topology)H: Preprotein translocase SecE subunit (From Topology)T: Preprotein translocase SecE subunitF: PF00584ECOD (1.6)
Q [auth j]PF01907e8bf9j1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
R [auth k]PF01781e8bf9k1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
S [auth l]PF00832e8bf9l1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
D [auth B]PF05753e8bf9B1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: PF05753ECOD (1.6)
G [auth P]PF00237e8bf9P1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
I [auth U]PF01776e8bf9U1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth A]Translocon-associated protein subunit alpha- -
F [auth G]Translocon-associated protein subunit gamma-
P [auth h]Large ribosomal subunit protein uL29
A [auth 5]RNA (1766)---
J [auth X]Ribosomal protein L23/L25 N-terminal domain-containing protein
K [auth Y]RL26 protein (Fragment)
L [auth C]Sec61a-
M [auth b]Sec61b---
N [auth d]Large ribosomal subunit protein eL31
O [auth g]Protein transport protein Sec61 subunit gamma
Q [auth j]Ribosomal protein L37
R [auth k]Large ribosomal subunit protein eL38
S [auth l]60S ribosomal protein L39
B [auth 8]RNA (156-MER)---
D [auth B]Translocon-associated protein subunit beta- -
E [auth D]Translocon-associated protein subunit delta- -
G [auth P]Large ribosomal subunit protein uL22
H [auth R]Ribosomal protein L19
I [auth U]RL22 protein (Fragment)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth A]IPR005595Translocon-associated protein (TRAP), alpha subunitFamily
F [auth G]IPR009779Translocon-associated protein subunit gammaFamily
P [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
P [auth h]IPR001854Large ribosomal subunit protein uL29Family
P [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
P [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
J [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
J [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
J [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
J [auth X]IPR019985Large ribosomal subunit protein uL23Family
J [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
J [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
K [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
K [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
K [auth Y]IPR005824KOWDomain
K [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
K [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
K [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
L [auth C]IPR002208SecY/SEC61-alpha familyFamily
L [auth C]IPR030659SecY conserved siteConserved Site
L [auth C]IPR019561Translocon Sec61/SecY, plug domainDomain
L [auth C]IPR023201SecY domain superfamilyHomologous Superfamily
N [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
N [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
N [auth d]IPR000054Large ribosomal subunit protein eL31Family
O [auth g]IPR008158Protein translocase SEC61 complex, gamma subunitFamily
O [auth g]IPR001901Protein translocase complex, SecE/Sec61-gamma subunitFamily
O [auth g]IPR023391Protein translocase SecE domain superfamilyHomologous Superfamily
Q [auth j]IPR001569Large ribosomal subunit protein eL37Family
Q [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
Q [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Q [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
R [auth k]IPR002675Large ribosomal subunit protein eL38Family
R [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
S [auth l]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
S [auth l]IPR000077Large ribosomal subunit protein eL39Family
S [auth l]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
D [auth B]IPR008856Translocon-associated protein subunit betaFamily
E [auth D]IPR008855Translocon-associatedFamily
G [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
G [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
G [auth P]IPR001063Large ribosomal subunit protein uL22Family
G [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
H [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
H [auth R]IPR039547Large ribosomal subunit protein eL19Family
H [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
H [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
H [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
H [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
I [auth U]IPR002671Large ribosomal subunit protein eL22Family
I [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily