8BDA

IFTA complex in anterograde intraflagellar transport trains (Chlamydomonas reinhardtii)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 20.7 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

The molecular structure of IFT-A and IFT-B in anterograde intraflagellar transport trains.

Lacey, S.E.Foster, H.E.Pigino, G.

(2023) Nat Struct Mol Biol 30: 584-593

  • DOI: https://doi.org/10.1038/s41594-022-00905-5
  • Primary Citation of Related Structures:  
    8BD7, 8BDA

  • PubMed Abstract: 

    Anterograde intraflagellar transport (IFT) trains are essential for cilia assembly and maintenance. These trains are formed of 22 IFT-A and IFT-B proteins that link structural and signaling cargos to microtubule motors for import into cilia. It remains unknown how the IFT-A/-B proteins are arranged into complexes and how these complexes polymerize into functional trains. Here we use in situ cryo-electron tomography of Chlamydomonas reinhardtii cilia and AlphaFold2 protein structure predictions to generate a molecular model of the entire anterograde train. We show how the conformations of both IFT-A and IFT-B are dependent on lateral interactions with neighboring repeats, suggesting that polymerization is required to cooperatively stabilize the complexes. Following three-dimensional classification, we reveal how IFT-B extends two flexible tethers to maintain a connection with IFT-A that can withstand the mechanical stresses present in actively beating cilia. Overall, our findings provide a framework for understanding the fundamental processes that govern cilia assembly.


  • Organizational Affiliation

    Human Technopole, Milan, Italy.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 121A [auth C]1,224Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A8JFR3 (Chlamydomonas reinhardtii)
Explore A8JFR3 
Go to UniProtKB:  A8JFR3
Entity Groups  
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UniProt GroupA8JFR3
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 139B [auth E]1,355Chlamydomonas reinhardtiiMutation(s): 1 
UniProt
Find proteins for A0A2K3DN83 (Chlamydomonas reinhardtii)
Explore A0A2K3DN83 
Go to UniProtKB:  A0A2K3DN83
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K3DN83
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport particle protein 140C [auth G]1,409Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A0A2K3DGM1 (Chlamydomonas reinhardtii)
Explore A0A2K3DGM1 
Go to UniProtKB:  A0A2K3DGM1
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UniProt GroupA0A2K3DGM1
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 144D [auth I]1,367Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for A9XPA7 (Chlamydomonas reinhardtii)
Explore A9XPA7 
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UniProt GroupA9XPA7
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  • Reference Sequence
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Intraflagellar transport protein 122 homologE [auth L]1,239Chlamydomonas reinhardtiiMutation(s): 0 
UniProt
Find proteins for H9CTG6 (Chlamydomonas reinhardtii)
Explore H9CTG6 
Go to UniProtKB:  H9CTG6
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UniProt GroupH9CTG6
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 20.7 Å
  • Aggregation State: HELICAL ARRAY 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION3.1.3
RECONSTRUCTIONWarp

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union--
Other governmentItaly--

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-11
    Type: Initial release
  • Version 1.1: 2023-05-24
    Changes: Structure summary
  • Version 1.2: 2023-05-31
    Changes: Database references
  • Version 1.3: 2023-07-26
    Changes: Other