8BD0

Human Gamma-D crystallin R36S mutant with DTT-Cystein Protein modification

• PDB DOI: https://doi.org/10.2210/pdb8BD0/pdb

• Classification: STRUCTURAL PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): Yes 


• Deposited: 2022-10-17 Released: 2023-11-01 
• Deposition Author(s): Yorke, B.A., Hill, J.A.
• Funding Organization(s): Wellcome Trust

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.250 
• R-Value Work: 0.204 
• R-Value Observed: 0.207 

Literature

Human Gamma-D crystallin R36S mutant with DTT-Protein modification

Yorke, B.A., Hill, J.A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 41.31 kDa 
• Atom Count: 3,018 
• Modelled Residue Count: 342 
• Deposited Residue Count: 342 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Human Gamma-D Crystallin R36S	A [auth X], B [auth A]	171	Homo sapiens	Mutation(s): 1
UniProt & NIH Common Fund Data Resources
Find proteins for P07320 (Homo sapiens) Explore P07320  Go to UniProtKB:  P07320
PHAROS:  P07320 GTEx:  ENSG00000118231

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
DTT (Subject of Investigation/LOI)	C [auth X], D [auth X], E [auth A], F [auth A]	2,3-DIHYDROXY-1,4-DITHIOBUTANE C4 H10 O2 S2 VHJLVAABSRFDPM-IMJSIDKUSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
CSO	A [auth X], B [auth A]	L-PEPTIDE LINKING	C3 H7 N O3 S		CYS

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 0.250 
• R-Value Work: 0.204 
• R-Value Observed: 0.207 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 53.9	α = 90
b = 83.7	β = 90
c = 101	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
CrystFEL	data reduction
CrystFEL	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-11-01 
Deposition Author(s): Yorke, B.A., Hill, J.A.

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Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	SBF0061044

Revision History  

• Version 1.0: 2023-11-01
  Type: Initial release
  
• Version 1.1: 2023-11-15
  Changes: Data collection