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 8AXG | pdb_00008axg

Crystal structure of Fusobacterium nucleatum fusolisin protease

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.04 Å
  • R-Value Free: 
    0.216 (Depositor), 0.216 (DCC) 
  • R-Value Work: 
    0.177 (Depositor), 0.177 (DCC) 

Starting Model: other
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wwPDB Validation 3D Report Full Report

Validation slider image for 8AXG

This is version 1.1 of the entry. See complete history. 

Literature

Crystal structure of Fusobacterium nucleatum fusolisin protease

Isupov, M.N., Wiener, R., Rouvinski, A., Fahoum, J., Kumar, M., Read, R.J.

To be published.

Macromolecule Content 

  • Total Structure Weight: 261.01 kDa 
  • Atom Count: 19,583 
  • Modeled Residue Count: 2,240 
  • Deposited Residue Count: 2,340 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:
|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
FusolisinA [auth AAA],
B [auth BBB],
C [auth CCC],
D [auth DDD]		585Fusobacterium nucleatumMutation(s): 0 
UniProt
Find proteins for A0A068B7P9 (Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355))
Explore A0A068B7P9 
Go to UniProtKB:  A0A068B7P9
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A068B7P9
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PG4

Query on PG4


Download:Ideal Coordinates CCD File
VC [auth CCC]TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
PGE

Query on PGE


Download:Ideal Coordinates CCD File
L [auth AAA],
XD [auth DDD]		TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
PEG

Query on PEG


Download:Ideal Coordinates CCD File
BD [auth DDD]
CC [auth CCC]
DD [auth DDD]
O [auth AAA]
PC [auth CCC]
BD [auth DDD],
CC [auth CCC],
DD [auth DDD],
O [auth AAA],
PC [auth CCC],
RA [auth BBB],
RC [auth CCC],
UD [auth DDD],
WB [auth BBB]
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
EDO

Query on EDO


Download:Ideal Coordinates CCD File
AA [auth AAA]
AB [auth BBB]
AC [auth CCC]
AD [auth DDD]
AE [auth DDD]
AA [auth AAA],
AB [auth BBB],
AC [auth CCC],
AD [auth DDD],
AE [auth DDD],
BA [auth AAA],
BB [auth BBB],
BC [auth CCC],
BE [auth DDD],
CA [auth AAA],
CB [auth BBB],
CD [auth DDD],
CE [auth DDD],
DA [auth AAA],
DB [auth BBB],
DC [auth CCC],
DE [auth DDD],
E [auth AAA],
EA [auth AAA],
EB [auth BBB],
EC [auth CCC],
ED [auth DDD],
EE [auth DDD],
F [auth AAA],
FA [auth AAA],
FB [auth BBB],
FC [auth CCC],
FD [auth DDD],
FE [auth DDD],
G [auth AAA],
GA [auth AAA],
GB [auth BBB],
GC [auth CCC],
GD [auth DDD],
GE [auth DDD],
H [auth AAA],
HA [auth AAA],
HB [auth BBB],
HC [auth CCC],
HD [auth DDD],
HE [auth DDD],
I [auth AAA],
IA [auth AAA],
IB [auth BBB],
IC [auth CCC],
ID [auth DDD],
J [auth AAA],
JA [auth AAA],
JB [auth BBB],
JC [auth CCC],
JD [auth DDD],
K [auth AAA],
KA [auth AAA],
KB [auth BBB],
KC [auth CCC],
KD [auth DDD],
LA [auth AAA],
LB [auth BBB],
LC [auth CCC],
LD [auth DDD],
M [auth AAA],
MA [auth AAA],
MB [auth BBB],
MC [auth CCC],
MD [auth DDD],
N [auth AAA],
NA [auth AAA],
NB [auth BBB],
NC [auth CCC],
ND [auth DDD],
OA [auth AAA],
OB [auth BBB],
OC [auth CCC],
OD [auth DDD],
P [auth AAA],
PA [auth BBB],
PB [auth BBB],
PD [auth DDD],
Q [auth AAA],
QA [auth BBB],
QB [auth BBB],
QC [auth CCC],
QD [auth DDD],
R [auth AAA],
RB [auth BBB],
RD [auth DDD],
S [auth AAA],
SA [auth BBB],
SB [auth BBB],
SC [auth CCC],
SD [auth DDD],
T [auth AAA],
TA [auth BBB],
TB [auth BBB],
TC [auth CCC],
TD [auth DDD],
U [auth AAA],
UA [auth BBB],
UB [auth BBB],
UC [auth CCC],
V [auth AAA],
VA [auth BBB],
VB [auth BBB],
VD [auth DDD],
W [auth AAA],
WA [auth BBB],
WC [auth CCC],
WD [auth DDD],
X [auth AAA],
XA [auth BBB],
XB [auth BBB],
XC [auth CCC],
Y [auth AAA],
YA [auth BBB],
YB [auth BBB],
YC [auth CCC],
YD [auth DDD],
Z [auth AAA],
ZA [auth BBB],
ZB [auth CCC],
ZC [auth CCC],
ZD [auth DDD]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.04 Å
  • R-Value Free:  0.216 (Depositor), 0.216 (DCC) 
  • R-Value Work:  0.177 (Depositor), 0.177 (DCC) 
Space Group: P 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 115.475α = 90
b = 115.475β = 90
c = 196.786γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
DIALSdata reduction
pointlessdata scaling
Aimlessdata scaling
PHASERphasing
PARROTphasing

Structure Validation

View Full Validation Report



View more in-depth experimental data

Entry History 

& Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-13
    Type: Initial release
  • Version 1.1: 2026-03-04
    Changes: Refinement description, Structure summary