8AXG | pdb_00008axg

Crystal structure of Fusobacterium nucleatum fusolisin protease


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.04 Å
  • R-Value Free: 
    0.216 (Depositor), 0.220 (DCC) 
  • R-Value Work: 
    0.177 (Depositor), 0.180 (DCC) 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Crystal structure of Fusobacterium nucleatum fusolisin protease

Isupov, M.N.Wiener, R.Rouvinski, A.Fahoum, J.Kumar, M.Read, R.J.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
FusolisinA [auth AAA],
B [auth BBB],
C [auth CCC],
D [auth DDD]
585Fusobacterium nucleatumMutation(s): 0 
UniProt
Find proteins for A0A068B7P9 (Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355))
Explore A0A068B7P9 
Go to UniProtKB:  A0A068B7P9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A068B7P9
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PG4
Query on PG4

Download Ideal Coordinates CCD File 
VC [auth CCC]TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
PGE
Query on PGE

Download Ideal Coordinates CCD File 
L [auth AAA],
XD [auth DDD]
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
PEG
Query on PEG

Download Ideal Coordinates CCD File 
BD [auth DDD]
CC [auth CCC]
DD [auth DDD]
O [auth AAA]
PC [auth CCC]
BD [auth DDD],
CC [auth CCC],
DD [auth DDD],
O [auth AAA],
PC [auth CCC],
RA [auth BBB],
RC [auth CCC],
UD [auth DDD],
WB [auth BBB]
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
EDO
Query on EDO

Download Ideal Coordinates CCD File 
AA [auth AAA]
AB [auth BBB]
AC [auth CCC]
AD [auth DDD]
AE [auth DDD]
AA [auth AAA],
AB [auth BBB],
AC [auth CCC],
AD [auth DDD],
AE [auth DDD],
BA [auth AAA],
BB [auth BBB],
BC [auth CCC],
BE [auth DDD],
CA [auth AAA],
CB [auth BBB],
CD [auth DDD],
CE [auth DDD],
DA [auth AAA],
DB [auth BBB],
DC [auth CCC],
DE [auth DDD],
E [auth AAA],
EA [auth AAA],
EB [auth BBB],
EC [auth CCC],
ED [auth DDD],
EE [auth DDD],
F [auth AAA],
FA [auth AAA],
FB [auth BBB],
FC [auth CCC],
FD [auth DDD],
FE [auth DDD],
G [auth AAA],
GA [auth AAA],
GB [auth BBB],
GC [auth CCC],
GD [auth DDD],
GE [auth DDD],
H [auth AAA],
HA [auth AAA],
HB [auth BBB],
HC [auth CCC],
HD [auth DDD],
HE [auth DDD],
I [auth AAA],
IA [auth AAA],
IB [auth BBB],
IC [auth CCC],
ID [auth DDD],
J [auth AAA],
JA [auth AAA],
JB [auth BBB],
JC [auth CCC],
JD [auth DDD],
K [auth AAA],
KA [auth AAA],
KB [auth BBB],
KC [auth CCC],
KD [auth DDD],
LA [auth AAA],
LB [auth BBB],
LC [auth CCC],
LD [auth DDD],
M [auth AAA],
MA [auth AAA],
MB [auth BBB],
MC [auth CCC],
MD [auth DDD],
N [auth AAA],
NA [auth AAA],
NB [auth BBB],
NC [auth CCC],
ND [auth DDD],
OA [auth AAA],
OB [auth BBB],
OC [auth CCC],
OD [auth DDD],
P [auth AAA],
PA [auth BBB],
PB [auth BBB],
PD [auth DDD],
Q [auth AAA],
QA [auth BBB],
QB [auth BBB],
QC [auth CCC],
QD [auth DDD],
R [auth AAA],
RB [auth BBB],
RD [auth DDD],
S [auth AAA],
SA [auth BBB],
SB [auth BBB],
SC [auth CCC],
SD [auth DDD],
T [auth AAA],
TA [auth BBB],
TB [auth BBB],
TC [auth CCC],
TD [auth DDD],
U [auth AAA],
UA [auth BBB],
UB [auth BBB],
UC [auth CCC],
V [auth AAA],
VA [auth BBB],
VB [auth BBB],
VD [auth DDD],
W [auth AAA],
WA [auth BBB],
WC [auth CCC],
WD [auth DDD],
X [auth AAA],
XA [auth BBB],
XB [auth BBB],
XC [auth CCC],
Y [auth AAA],
YA [auth BBB],
YB [auth BBB],
YC [auth CCC],
YD [auth DDD],
Z [auth AAA],
ZA [auth BBB],
ZB [auth CCC],
ZC [auth CCC],
ZD [auth DDD]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.04 Å
  • R-Value Free:  0.216 (Depositor), 0.220 (DCC) 
  • R-Value Work:  0.177 (Depositor), 0.180 (DCC) 
Space Group: P 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 115.475α = 90
b = 115.475β = 90
c = 196.786γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
DIALSdata reduction
pointlessdata scaling
Aimlessdata scaling
PHASERphasing
PARROTphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-13
    Type: Initial release