8ARI

Cryo-EM structure of human CtBP1/RAI2(303-362) delta(331-341) filament

PDB DOI: https://doi.org/10.2210/pdb8ARI/pdb
EM Map EMD-15603: EMDB EMDataResource

Classification: ANTITUMOR PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-08-16 Released: 2023-08-23
Deposition Author(s): Mullapudi, E., Goradia, N., Wilmanns, M.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.00 Å
Aggregation State: FILAMENT
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of human CtBP1/RAI2(303-362) delta(331-341) filament

Goradia, N., Mullapudi, E., Wilmanns, M.

To be published.

Macromolecule Content

Total Structure Weight: 1,347.06 kDa
Atom Count: 63,756
Modelled Residue Count: 8,160
Deposited Residue Count: 12,258
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
C-terminal-binding protein 1	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	457	Homo sapiens	Mutation(s): 0 Gene Names: CTBP1, CTBP EC: 1.1.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q13363 (Homo sapiens) Explore Q13363 Go to UniProtKB: Q13363
PHAROS: Q13363 GTEx: ENSG00000159692
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q13363
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Retinoic acid-induced protein 2	AA [auth c] BA [auth d] CA [auth e] DA [auth f] EA [auth g] AA [auth c], BA [auth d], CA [auth e], DA [auth f], EA [auth g], FA [auth h], GA [auth i], HA [auth j], Y [auth a], Z [auth b]	129	Homo sapiens	Mutation(s): 0 Gene Names: RAI2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y5P3 (Homo sapiens) Explore Q9Y5P3 Go to UniProtKB: Q9Y5P3
PHAROS: Q9Y5P3 GTEx: ENSG00000131831
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9Y5P3
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAD (Subject of Investigation/LOI) Query on NAD Download Ideal Coordinates CCD File SDF format, chain CB [auth U] SDF format, chain FB [auth X] SDF format, chain MA [auth E] SDF format, chain PA [auth H] SDF format, chain RA [auth J] SDF format, chain SA [auth K] SDF format, chain TA [auth L] SDF format, chain UA [auth M] SDF format, chain YA [auth Q] SDF format, chain ZA [auth R] SDF format, chain AB [auth S] SDF format, chain BB [auth T] SDF format, chain DB [auth V] SDF format, chain EB [auth W] SDF format, chain IA [auth A] SDF format, chain JA [auth B] SDF format, chain KA [auth C] SDF format, chain LA [auth D] SDF format, chain NA [auth F] SDF format, chain OA [auth G] SDF format, chain QA [auth I] SDF format, chain VA [auth N] SDF format, chain WA [auth O] SDF format, chain XA [auth P] MOL2 format, chain CB [auth U] MOL2 format, chain FB [auth X] MOL2 format, chain MA [auth E] MOL2 format, chain PA [auth H] MOL2 format, chain RA [auth J] MOL2 format, chain SA [auth K] MOL2 format, chain TA [auth L] MOL2 format, chain UA [auth M] MOL2 format, chain YA [auth Q] MOL2 format, chain ZA [auth R] MOL2 format, chain AB [auth S] MOL2 format, chain BB [auth T] MOL2 format, chain DB [auth V] MOL2 format, chain EB [auth W] MOL2 format, chain IA [auth A] MOL2 format, chain JA [auth B] MOL2 format, chain KA [auth C] MOL2 format, chain LA [auth D] MOL2 format, chain NA [auth F] MOL2 format, chain OA [auth G] MOL2 format, chain QA [auth I] MOL2 format, chain VA [auth N] MOL2 format, chain WA [auth O] MOL2 format, chain XA [auth P]	AB [auth S] BB [auth T] CB [auth U] DB [auth V] EB [auth W] AB [auth S], BB [auth T], CB [auth U], DB [auth V], EB [auth W], FB [auth X], IA [auth A], JA [auth B], KA [auth C], LA [auth D], MA [auth E], NA [auth F], OA [auth G], PA [auth H], QA [auth I], RA [auth J], SA [auth K], TA [auth L], UA [auth M], VA [auth N], WA [auth O], XA [auth P], YA [auth Q], ZA [auth R]	NICOTINAMIDE-ADENINE-DINUCLEOTIDE C₂₁ H₂₇ N₇ O₁₄ P₂ BAWFJGJZGIEFAR-NNYOXOHSSA-N		Interactions Focus chain AB [auth S] Focus chain BB [auth T] Focus chain CB [auth U] Focus chain DB [auth V] Focus chain EB [auth W] Focus chain FB [auth X] Focus chain IA [auth A] Focus chain JA [auth B] Focus chain KA [auth C] Focus chain LA [auth D] Focus chain MA [auth E] Focus chain NA [auth F] Focus chain OA [auth G] Focus chain PA [auth H] Focus chain QA [auth I] Focus chain RA [auth J] Focus chain SA [auth K] Focus chain TA [auth L] Focus chain UA [auth M] Focus chain VA [auth N] Focus chain WA [auth O] Focus chain XA [auth P] Focus chain YA [auth Q] Focus chain ZA [auth R] Interactions & Density Focus chain AB [auth S] Focus chain BB [auth T] Focus chain CB [auth U] Focus chain DB [auth V] Focus chain EB [auth W] Focus chain FB [auth X] Focus chain IA [auth A] Focus chain JA [auth B] Focus chain KA [auth C] Focus chain LA [auth D] Focus chain MA [auth E] Focus chain NA [auth F] Focus chain OA [auth G] Focus chain PA [auth H] Focus chain QA [auth I] Focus chain RA [auth J] Focus chain SA [auth K] Focus chain TA [auth L] Focus chain UA [auth M] Focus chain VA [auth N] Focus chain WA [auth O] Focus chain XA [auth P] Focus chain YA [auth Q] Focus chain ZA [auth R]