8ARI | pdb_00008ari

Cryo-EM structure of human CtBP1/RAI2(303-362) delta(331-341) filament

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	D-2-hydroxyacid dehydrogenase-like	8056169	3000044	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain (2-Hacid_dh_C)	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family Pfam:PF00389.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (2-Hacid_dh)	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth c], BA [auth d], CA [auth e], DA [auth f], EA [auth g], AA [auth c], BA [auth d], CA [auth e], DA [auth f], EA [auth g], FA [auth h], GA [auth i], HA [auth j], Y [auth a], Z [auth b]	Retinoic acid-induced protein 2	-	developmental process animal organ development anatomical structure development multicellular organism development multicellular organismal process embryo development ending in birth or egg hatching embryo development	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	C-terminal-binding protein 1	transcription factor binding transcription coregulator binding transcription corepressor binding protein binding binding protein domain specific binding RNA binding lncRNA binding nucleic acid binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding chromatin binding transcription coactivator activity transcription regulator activity transcription factor binding transcription coregulator binding transcription corepressor binding protein binding binding protein domain specific binding RNA binding lncRNA binding nucleic acid binding RNA polymerase II-specific DNA-binding transcription factor binding DNA-binding transcription factor binding chromatin binding transcription coactivator activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity transcription corepressor activity oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors catalytic activity NAD binding nucleoside phosphate binding purine nucleotide binding adenyl nucleotide binding nucleotide binding heterocyclic compound binding small molecule binding identical protein binding	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process synaptic vesicle endocytosis import into cell cellular localization transport synaptic vesicle cycle establishment of localization vesicle-mediated transport presynaptic endocytosis vesicle-mediated transport in synapse synaptic vesicle recycling localization establishment of localization in cell endocytosis viral genome replication viral process viral life cycle vesicle localization synaptic vesicle clustering organelle localization synaptic vesicle localization protein phosphorylation phosphorylation macromolecule modification phosphate-containing compound metabolic process protein metabolic process protein modification process phosphorus metabolic process negative regulation of cell population proliferation cell population proliferation regulation of cell population proliferation transcription by RNA polymerase II regulation of transcription by RNA polymerase II cell cycle regulation of cell cycle negative regulation of transcription by RNA polymerase II cellular response to stimulus cell surface receptor signaling pathway response to stimulus signaling cell communication Notch signaling pathway signal transduction developmental process fat cell differentiation cellular developmental process cell differentiation white fat cell differentiation	cell cortex intracellular anatomical structure synapse cytoplasmic region presynaptic active zone cytoplasmic component cell periphery presynapse cellular anatomical structure cell junction cell cortex region cytoplasm presynaptic active zone membrane-bounded organelle nucleus cell cortex intracellular anatomical structure synapse cytoplasmic region presynaptic active zone cytoplasmic component cell periphery presynapse cellular anatomical structure cell junction cell cortex region cytoplasm presynaptic active zone membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen GABA-ergic synapse glutamatergic synapse protein-containing complex transcription regulator complex transcription repressor complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth c], BA [auth d], CA [auth e], DA [auth f], EA [auth g], AA [auth c], BA [auth d], CA [auth e], DA [auth f], EA [auth g], FA [auth h], GA [auth i], HA [auth j], Y [auth a], Z [auth b]	IPR026092	Retinoic acid-induced protein 2/sine oculis-binding protein homologue	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR006139	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR029752	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR051638	C-terminal-binding dehydrogenase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR043322	C-terminal binding protein	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR029753	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR006140	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
AA [auth c], BA [auth d], CA [auth e], DA [auth f], EA [auth g], AA [auth c], BA [auth d], CA [auth e], DA [auth f], EA [auth g], FA [auth h], GA [auth i], HA [auth j], Y [auth a], Z [auth b]	Pharos: Q9Y5P3	adrenal cortex carcinoma breast cancer glioblastoma lung cancer medulloblastoma pancreatic intraductal papillary-mucinous neoplasm atopic eczema Crohn disease invasive ductal breast carcinoma malignant colon neoplasm non-small cell lung carcinoma psoriasis atypical teratoid rhabdoid tumor ductal breast carcinoma in situ lung adenocarcinoma adrenal cortex carcinoma breast cancer glioblastoma lung cancer medulloblastoma pancreatic intraductal papillary-mucinous neoplasm atopic eczema Crohn disease invasive ductal breast carcinoma malignant colon neoplasm non-small cell lung carcinoma psoriasis atypical teratoid rhabdoid tumor ductal breast carcinoma in situ lung adenocarcinoma malignant glioma pancreatic intraductal papillary-mucinous carcinoma ulcerative colitis
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	Pharos: Q13363	Wolf-Hirschhorn syndrome colorectal cancer astrocytic tumor colorectal carcinoma lymphoplasmacytic lymphoma pancreatic intraductal papillary-mucinous neoplasm psoriasis attention deficit hyperactivity disorder, inattentive type Colorectal Neoplasms osteosarcoma plasma cell myeloma hypotonia, ataxia, developmental delay, and tooth enamel defect syndrome ovarian cancer polycystic ovary syndrome