8AKR

200 A SynPspA rod after incubation with ATP

PDB DOI: https://doi.org/10.2210/pdb8AKR/pdb
EM Map EMD-15490: EMDB EMDataResource

Classification: LIPID BINDING PROTEIN
Organism(s): Synechocystis sp. PCC 6803
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-07-31 Released: 2024-02-14
Deposition Author(s): Junglas, B., Hudina, E., Schoennenbeck, P., Ritter, I., Santiago-Schuebel, B., Huesgen, P., Sachse, C.
Funding Organization(s): European Union (EU)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.80 Å
Aggregation State: HELICAL ARRAY
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Non-canonical ATPase activity drives PspA membrane constriction

Junglas, B., Hudina, E., Schoennenbeck, P., Ritter, I., Santiago-Schuebel, B., Huesgen, P., Sachse, C.

To be published.

Macromolecule Content

Total Structure Weight: 1,711.5 kDa
Atom Count: 96,240
Modelled Residue Count: 11,760
Deposited Residue Count: 14,760
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Chloroplast membrane-associated 30 kD protein	A [auth H] AA [auth a] AB [auth 0] B [auth A] BA [auth b] A [auth H], AA [auth a], AB [auth 0], B [auth A], BA [auth b], BB [auth 1], C [auth B], CA [auth c], CB [auth 2], D [auth C], DA [auth d], DB [auth 3], E [auth D], EA [auth e], EB [auth 4], F [auth E], FA [auth f], FB [auth 5], G [auth F], GA [auth g], GB [auth 6], H [auth G], HA [auth h], HB [auth 7], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	246	Synechocystis sp. PCC 6803	Mutation(s): 0 Gene Names: im30
UniProt
Find proteins for P74717 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P74717 Go to UniProtKB: P74717
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P74717
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ADP (Subject of Investigation/LOI) Query on ADP Download Ideal Coordinates CCD File SDF format, chain AC [auth R] SDF format, chain AD [auth r] SDF format, chain BC [auth S] SDF format, chain BD [auth s] SDF format, chain CC [auth T] SDF format, chain CD [auth t] SDF format, chain DC [auth U] SDF format, chain DD [auth u] SDF format, chain EC [auth V] SDF format, chain ED [auth v] SDF format, chain FC [auth W] SDF format, chain FD [auth w] SDF format, chain GC [auth X] SDF format, chain GD [auth y] SDF format, chain HC [auth Y] SDF format, chain HD [auth z] SDF format, chain IB [auth H] SDF format, chain IC [auth Z] SDF format, chain ID [auth 0] SDF format, chain JB [auth A] SDF format, chain JC [auth a] SDF format, chain JD [auth 1] SDF format, chain KB [auth B] SDF format, chain KC [auth b] SDF format, chain KD [auth 2] SDF format, chain LB [auth C] SDF format, chain LC [auth c] SDF format, chain LD [auth 3] SDF format, chain MB [auth D] SDF format, chain MC [auth d] SDF format, chain MD [auth 4] SDF format, chain NB [auth E] SDF format, chain NC [auth e] SDF format, chain ND [auth 5] SDF format, chain OB [auth F] SDF format, chain OC [auth f] SDF format, chain OD [auth 6] SDF format, chain PB [auth G] SDF format, chain PC [auth g] SDF format, chain PD [auth 7] SDF format, chain QB [auth I] SDF format, chain QC [auth h] SDF format, chain RB [auth J] SDF format, chain RC [auth i] SDF format, chain SB [auth K] SDF format, chain SC [auth j] SDF format, chain TB [auth L] SDF format, chain TC [auth k] SDF format, chain UB [auth M] SDF format, chain UC [auth l] SDF format, chain VB [auth N] SDF format, chain VC [auth m] SDF format, chain WB [auth O] SDF format, chain WC [auth n] SDF format, chain XB [auth P] SDF format, chain XC [auth o] SDF format, chain YB [auth P] SDF format, chain YC [auth p] SDF format, chain ZB [auth Q] SDF format, chain ZC [auth q] MOL2 format, chain AC [auth R] MOL2 format, chain AD [auth r] MOL2 format, chain BC [auth S] MOL2 format, chain BD [auth s] MOL2 format, chain CC [auth T] MOL2 format, chain CD [auth t] MOL2 format, chain DC [auth U] MOL2 format, chain DD [auth u] MOL2 format, chain EC [auth V] MOL2 format, chain ED [auth v] MOL2 format, chain FC [auth W] MOL2 format, chain FD [auth w] MOL2 format, chain GC [auth X] MOL2 format, chain GD [auth y] MOL2 format, chain HC [auth Y] MOL2 format, chain HD [auth z] MOL2 format, chain IB [auth H] MOL2 format, chain IC [auth Z] MOL2 format, chain ID [auth 0] MOL2 format, chain JB [auth A] MOL2 format, chain JC [auth a] MOL2 format, chain JD [auth 1] MOL2 format, chain KB [auth B] MOL2 format, chain KC [auth b] MOL2 format, chain KD [auth 2] MOL2 format, chain LB [auth C] MOL2 format, chain LC [auth c] MOL2 format, chain LD [auth 3] MOL2 format, chain MB [auth D] MOL2 format, chain MC [auth d] MOL2 format, chain MD [auth 4] MOL2 format, chain NB [auth E] MOL2 format, chain NC [auth e] MOL2 format, chain ND [auth 5] MOL2 format, chain OB [auth F] MOL2 format, chain OC [auth f] MOL2 format, chain OD [auth 6] MOL2 format, chain PB [auth G] MOL2 format, chain PC [auth g] MOL2 format, chain PD [auth 7] MOL2 format, chain QB [auth I] MOL2 format, chain QC [auth h] MOL2 format, chain RB [auth J] MOL2 format, chain RC [auth i] MOL2 format, chain SB [auth K] MOL2 format, chain SC [auth j] MOL2 format, chain TB [auth L] MOL2 format, chain TC [auth k] MOL2 format, chain UB [auth M] MOL2 format, chain UC [auth l] MOL2 format, chain VB [auth N] MOL2 format, chain VC [auth m] MOL2 format, chain WB [auth O] MOL2 format, chain WC [auth n] MOL2 format, chain XB [auth P] MOL2 format, chain XC [auth o] MOL2 format, chain YB [auth P] MOL2 format, chain YC [auth p] MOL2 format, chain ZB [auth Q] MOL2 format, chain ZC [auth q]	AC [auth R] AD [auth r] BC [auth S] BD [auth s] CC [auth T] AC [auth R], AD [auth r], BC [auth S], BD [auth s], CC [auth T], CD [auth t], DC [auth U], DD [auth u], EC [auth V], ED [auth v], FC [auth W], FD [auth w], GC [auth X], GD [auth y], HC [auth Y], HD [auth z], IB [auth H], IC [auth Z], ID [auth 0], JB [auth A], JC [auth a], JD [auth 1], KB [auth B], KC [auth b], KD [auth 2], LB [auth C], LC [auth c], LD [auth 3], MB [auth D], MC [auth d], MD [auth 4], NB [auth E], NC [auth e], ND [auth 5], OB [auth F], OC [auth f], OD [auth 6], PB [auth G], PC [auth g], PD [auth 7], QB [auth I], QC [auth h], RB [auth J], RC [auth i], SB [auth K], SC [auth j], TB [auth L], TC [auth k], UB [auth M], UC [auth l], VB [auth N], VC [auth m], WB [auth O], WC [auth n], XB [auth P], XC [auth o], YB [auth P], YC [auth p], ZB [auth Q], ZC [auth q]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Interactions Focus chain AC [auth R] Focus chain AD [auth r] Focus chain BC [auth S] Focus chain BD [auth s] Focus chain CC [auth T] Focus chain CD [auth t] Focus chain DC [auth U] Focus chain DD [auth u] Focus chain EC [auth V] Focus chain ED [auth v] Focus chain FC [auth W] Focus chain FD [auth w] Focus chain GC [auth X] Focus chain GD [auth y] Focus chain HC [auth Y] Focus chain HD [auth z] Focus chain IB [auth H] Focus chain IC [auth Z] Focus chain ID [auth 0] Focus chain JB [auth A] Focus chain JC [auth a] Focus chain JD [auth 1] Focus chain KB [auth B] Focus chain KC [auth b] Focus chain KD [auth 2] Focus chain LB [auth C] Focus chain LC [auth c] Focus chain LD [auth 3] Focus chain MB [auth D] Focus chain MC [auth d] Focus chain MD [auth 4] Focus chain NB [auth E] Focus chain NC [auth e] Focus chain ND [auth 5] Focus chain OB [auth F] Focus chain OC [auth f] Focus chain OD [auth 6] Focus chain PB [auth G] Focus chain PC [auth g] Focus chain PD [auth 7] Focus chain QB [auth I] Focus chain QC [auth h] Focus chain RB [auth J] Focus chain RC [auth i] Focus chain SB [auth K] Focus chain SC [auth j] Focus chain TB [auth L] Focus chain TC [auth k] Focus chain UB [auth M] Focus chain UC [auth l] Focus chain VB [auth N] Focus chain VC [auth m] Focus chain WB [auth O] Focus chain WC [auth n] Focus chain XB [auth P] Focus chain XC [auth o] Focus chain YB [auth P] Focus chain YC [auth p] Focus chain ZB [auth Q] Focus chain ZC [auth q] Interactions & Density Focus chain AC [auth R] Focus chain AD [auth r] Focus chain BC [auth S] Focus chain BD [auth s] Focus chain CC [auth T] Focus chain CD [auth t] Focus chain DC [auth U] Focus chain DD [auth u] Focus chain EC [auth V] Focus chain ED [auth v] Focus chain FC [auth W] Focus chain FD [auth w] Focus chain GC [auth X] Focus chain GD [auth y] Focus chain HC [auth Y] Focus chain HD [auth z] Focus chain IB [auth H] Focus chain IC [auth Z] Focus chain ID [auth 0] Focus chain JB [auth A] Focus chain JC [auth a] Focus chain JD [auth 1] Focus chain KB [auth B] Focus chain KC [auth b] Focus chain KD [auth 2] Focus chain LB [auth C] Focus chain LC [auth c] Focus chain LD [auth 3] Focus chain MB [auth D] Focus chain MC [auth d] Focus chain MD [auth 4] Focus chain NB [auth E] Focus chain NC [auth e] Focus chain ND [auth 5] Focus chain OB [auth F] Focus chain OC [auth f] Focus chain OD [auth 6] Focus chain PB [auth G] Focus chain PC [auth g] Focus chain PD [auth 7] Focus chain QB [auth I] Focus chain QC [auth h] Focus chain RB [auth J] Focus chain RC [auth i] Focus chain SB [auth K] Focus chain SC [auth j] Focus chain TB [auth L] Focus chain TC [auth k] Focus chain UB [auth M] Focus chain UC [auth l] Focus chain VB [auth N] Focus chain VC [auth m] Focus chain WB [auth O] Focus chain WC [auth n] Focus chain XB [auth P] Focus chain XC [auth o] Focus chain YB [auth P] Focus chain YC [auth p] Focus chain ZB [auth Q] Focus chain ZC [auth q]